| Name | bamread JSON |
| Version |
0.0.16
JSON |
| download |
| home_page | |
| Summary | Read bam files quickly into dataframes in Python |
| upload_time | 2023-05-17 16:43:16 |
| maintainer | |
| docs_url | None |
| author | |
| requires_python | |
| license | MIT |
| keywords |
bioinformatics
bam
pysam
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# bamread
Read bam files quickly into dataframes in Python
## Development
### Development
See [How to Publish an Open-Source Python Package to PyPI](https://realpython.com/pypi-publish-python-package/)
Install
```bash
pip install -e . # -e flag means editing affects the installed package
```
Create sdist and wheel (requires [build](https://pypa-build.readthedocs.io/en/stable/))
```bash
python -m build
```
Check whether the package archives look fine:
```bash
twine check dist/*
```
Upload to PyPI test server
```bash
twine upload -r testpypi dist/*
```
Chek that the package can be installed from the test server
```bash
python -m pip install -i https://test.pypi.org/simple bamread
python -c "import bamread; print(bamread.read_bam('Some.bam'))"
```
Upload to pypi
```bash
twine upload -r testpypi dist/*
```
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