[](https://pypi.org/project/bdi-kit)
[](https://opensource.org/licenses/Apache-2.0)
# bdi-kit
This project aims to assist users in performing data integration on biomedical data. It provides tools to streamline the process of integrating disparate biomedical datasets.
## Installation
You can install the latest stable version of this library from [PyPI](https://pypi.org/project/bdi-kit/):
```
pip install bdi-kit
```
To install the latest development version:
```
pip install git+https://github.com/VIDA-NYU/bdi-kit@devel
```
Download the pre-trained model for mapping recommendations from [here](https://drive.google.com/file/d/1YdCTd-kUMjDJaltQwXN4X9ezTCsfjyft/view) (we show how to use it in our examples).
## Documentation
See our examples [here](https://github.com/VIDA-NYU/bdi-kit/tree/devel/examples).
## Folder Structure
- **/data_ingestion**:
- Contains scripts and tools for ingesting data into the system.
- **/mapping_algorithms**:
- Algorithms and utilities for schema and value mapping.
- **/mapping_recommendation**:
- Interacts with mapping_algorithms and users to suggest mappings for data integration. The output is a mapping plan.
- **/transformation**:
- Transforms the data given a mapping plan.
- **/visualization**:
- Visualizations to aid in the mapping recommendation process.
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