dipy


Namedipy JSON
Version 1.9.0 PyPI version JSON
download
home_pagehttps://dipy.org
SummaryDiffusion MRI Imaging in Python
upload_time2024-03-08 22:14:36
maintainer
docs_urlNone
author
requires_python>=3.9
licenseUnless otherwise specified by LICENSE.txt files in individual directories, or within individual files or functions, all code is: Copyright (c) 2008-2024, dipy developers All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the dipy developers nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
keywords dipy diffusionimaging dti tracking tractography diffusionmri mri tractometry connectomics brain dipymri microstructure deeplearning registration segmentations simulation medical imaging brain machinelearning signalprocessing
VCS
bugtrack_url
requirements cython numpy scipy nibabel h5py packaging tqdm trx-python
Travis-CI No Travis.
coveralls test coverage
            .. image:: doc/_static/images/logos/dipy-logo.png
  :height: 180px
  :target: http://dipy.org
  :alt: DIPY - Diffusion Imaging in Python

|

.. image:: https://github.com/dipy/dipy/actions/workflows/test.yml/badge.svg?branch=master
  :target: https://github.com/dipy/dipy/actions/workflows/test.yml

.. image:: https://codecov.io/gh/dipy/dipy/branch/master/graph/badge.svg
  :target: https://codecov.io/gh/dipy/dipy

.. image:: https://img.shields.io/pypi/v/dipy.svg
  :target: https://pypi.python.org/pypi/dipy

.. image:: https://anaconda.org/conda-forge/dipy/badges/platforms.svg
  :target: https://anaconda.org/conda-forge/dipy

.. image:: https://anaconda.org/conda-forge/dipy/badges/downloads.svg
  :target: https://anaconda.org/conda-forge/dipy

.. image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg
  :target: https://github.com/dipy/dipy/blob/master/LICENSE


DIPY [DIPYREF]_ is a python library for the analysis of MR diffusion imaging.

DIPY is for research only; please contact admins@dipy.org if you plan to deploy
in clinical settings.

Website
=======

Current information can always be found from the DIPY website - http://dipy.org

Mailing Lists
=============

Please see the DIPY community list at
https://mail.python.org/mailman3/lists/dipy.python.org/

Please see the users' forum at
https://github.com/dipy/dipy/discussions

Please join the gitter chatroom `here <https://gitter.im/dipy/dipy>`_.

Code
====

You can find our sources and single-click downloads:

* `Main repository`_ on Github.
* Documentation_ for all releases and current development tree.
* Download as a tar/zip file the `current trunk`_.

.. _main repository: http://github.com/dipy/dipy
.. _Documentation: http://dipy.org
.. _current trunk: http://github.com/dipy/dipy/archives/master


Installing DIPY
===============

DIPY can be installed using `pip`::

    pip install dipy

or using `conda`::

    conda install -c conda-forge dipy

For detailed installation instructions, including instructions for installing
from source, please read our `installation documentation <https://docs.dipy.org/stable/user_guide/installation.html>`_.

Python versions and dependencies
--------------------------------

DIPY follows the `Scientific Python`_ `SPEC 0 — Minimum Supported Versions`_
recommendation as closely as possible, including the supported Python and
dependencies versions.

Further information can be found in `Toolchain Roadmap <https://docs.dipy.org/stable/devel/toolchain.html>`_.

License
=======

DIPY is licensed under the terms of the BSD license.
Please see the `LICENSE file <https://github.com/dipy/dipy/blob/master/LICENSE>`_.

Contributing
============

We welcome contributions from the community. Please read our `Contributing guidelines <https://github.com/dipy/dipy/blob/master/.github/CONTRIBUTING.md>`_.

Reference
=========

.. [DIPYREF] E. Garyfallidis, M. Brett, B. Amirbekian, A. Rokem,
    S. Van Der Walt, M. Descoteaux, I. Nimmo-Smith and DIPY contributors,
    "DIPY, a library for the analysis of diffusion MRI data",
    Frontiers in Neuroinformatics, vol. 8, p. 8, Frontiers, 2014.


.. _`Scientific Python`: https://scientific-python.org/
.. _`SPEC 0 — Minimum Supported Versions`: https://scientific-python.org/specs/spec-0000/

            

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