| Name | dipy JSON |
| Version |
1.9.0
JSON |
| download |
| home_page | https://dipy.org |
| Summary | Diffusion MRI Imaging in Python |
| upload_time | 2024-03-08 22:14:36 |
| maintainer | |
| docs_url | None |
| author | |
| requires_python | >=3.9 |
| license | Unless otherwise specified by LICENSE.txt files in individual directories, or within individual files or functions, all code is: Copyright (c) 2008-2024, dipy developers All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the dipy developers nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| keywords |
dipy
diffusionimaging
dti
tracking
tractography
diffusionmri
mri
tractometry
connectomics
brain
dipymri
microstructure
deeplearning
registration
segmentations
simulation
medical
imaging
brain
machinelearning
signalprocessing
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
cython
numpy
scipy
nibabel
h5py
packaging
tqdm
trx-python
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
|
.. image:: doc/_static/images/logos/dipy-logo.png
:height: 180px
:target: http://dipy.org
:alt: DIPY - Diffusion Imaging in Python
|
.. image:: https://github.com/dipy/dipy/actions/workflows/test.yml/badge.svg?branch=master
:target: https://github.com/dipy/dipy/actions/workflows/test.yml
.. image:: https://codecov.io/gh/dipy/dipy/branch/master/graph/badge.svg
:target: https://codecov.io/gh/dipy/dipy
.. image:: https://img.shields.io/pypi/v/dipy.svg
:target: https://pypi.python.org/pypi/dipy
.. image:: https://anaconda.org/conda-forge/dipy/badges/platforms.svg
:target: https://anaconda.org/conda-forge/dipy
.. image:: https://anaconda.org/conda-forge/dipy/badges/downloads.svg
:target: https://anaconda.org/conda-forge/dipy
.. image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg
:target: https://github.com/dipy/dipy/blob/master/LICENSE
DIPY [DIPYREF]_ is a python library for the analysis of MR diffusion imaging.
DIPY is for research only; please contact admins@dipy.org if you plan to deploy
in clinical settings.
Website
=======
Current information can always be found from the DIPY website - http://dipy.org
Mailing Lists
=============
Please see the DIPY community list at
https://mail.python.org/mailman3/lists/dipy.python.org/
Please see the users' forum at
https://github.com/dipy/dipy/discussions
Please join the gitter chatroom `here <https://gitter.im/dipy/dipy>`_.
Code
====
You can find our sources and single-click downloads:
* `Main repository`_ on Github.
* Documentation_ for all releases and current development tree.
* Download as a tar/zip file the `current trunk`_.
.. _main repository: http://github.com/dipy/dipy
.. _Documentation: http://dipy.org
.. _current trunk: http://github.com/dipy/dipy/archives/master
Installing DIPY
===============
DIPY can be installed using `pip`::
pip install dipy
or using `conda`::
conda install -c conda-forge dipy
For detailed installation instructions, including instructions for installing
from source, please read our `installation documentation <https://docs.dipy.org/stable/user_guide/installation.html>`_.
Python versions and dependencies
--------------------------------
DIPY follows the `Scientific Python`_ `SPEC 0 — Minimum Supported Versions`_
recommendation as closely as possible, including the supported Python and
dependencies versions.
Further information can be found in `Toolchain Roadmap <https://docs.dipy.org/stable/devel/toolchain.html>`_.
License
=======
DIPY is licensed under the terms of the BSD license.
Please see the `LICENSE file <https://github.com/dipy/dipy/blob/master/LICENSE>`_.
Contributing
============
We welcome contributions from the community. Please read our `Contributing guidelines <https://github.com/dipy/dipy/blob/master/.github/CONTRIBUTING.md>`_.
Reference
=========
.. [DIPYREF] E. Garyfallidis, M. Brett, B. Amirbekian, A. Rokem,
S. Van Der Walt, M. Descoteaux, I. Nimmo-Smith and DIPY contributors,
"DIPY, a library for the analysis of diffusion MRI data",
Frontiers in Neuroinformatics, vol. 8, p. 8, Frontiers, 2014.
.. _`Scientific Python`: https://scientific-python.org/
.. _`SPEC 0 — Minimum Supported Versions`: https://scientific-python.org/specs/spec-0000/
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"description": ".. image:: doc/_static/images/logos/dipy-logo.png\n :height: 180px\n :target: http://dipy.org\n :alt: DIPY - Diffusion Imaging in Python\n\n|\n\n.. image:: https://github.com/dipy/dipy/actions/workflows/test.yml/badge.svg?branch=master\n :target: https://github.com/dipy/dipy/actions/workflows/test.yml\n\n.. image:: https://codecov.io/gh/dipy/dipy/branch/master/graph/badge.svg\n :target: https://codecov.io/gh/dipy/dipy\n\n.. image:: https://img.shields.io/pypi/v/dipy.svg\n :target: https://pypi.python.org/pypi/dipy\n\n.. image:: https://anaconda.org/conda-forge/dipy/badges/platforms.svg\n :target: https://anaconda.org/conda-forge/dipy\n\n.. image:: https://anaconda.org/conda-forge/dipy/badges/downloads.svg\n :target: https://anaconda.org/conda-forge/dipy\n\n.. image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg\n :target: https://github.com/dipy/dipy/blob/master/LICENSE\n\n\nDIPY [DIPYREF]_ is a python library for the analysis of MR diffusion imaging.\n\nDIPY is for research only; please contact admins@dipy.org if you plan to deploy\nin clinical settings.\n\nWebsite\n=======\n\nCurrent information can always be found from the DIPY website - http://dipy.org\n\nMailing Lists\n=============\n\nPlease see the DIPY community list at\nhttps://mail.python.org/mailman3/lists/dipy.python.org/\n\nPlease see the users' forum at\nhttps://github.com/dipy/dipy/discussions\n\nPlease join the gitter chatroom `here <https://gitter.im/dipy/dipy>`_.\n\nCode\n====\n\nYou can find our sources and single-click downloads:\n\n* `Main repository`_ on Github.\n* Documentation_ for all releases and current development tree.\n* Download as a tar/zip file the `current trunk`_.\n\n.. _main repository: http://github.com/dipy/dipy\n.. _Documentation: http://dipy.org\n.. _current trunk: http://github.com/dipy/dipy/archives/master\n\n\nInstalling DIPY\n===============\n\nDIPY can be installed using `pip`::\n\n pip install dipy\n\nor using `conda`::\n\n conda install -c conda-forge dipy\n\nFor detailed installation instructions, including instructions for installing\nfrom source, please read our `installation documentation <https://docs.dipy.org/stable/user_guide/installation.html>`_.\n\nPython versions and dependencies\n--------------------------------\n\nDIPY follows the `Scientific Python`_ `SPEC 0 \u2014 Minimum Supported Versions`_\nrecommendation as closely as possible, including the supported Python and\ndependencies versions.\n\nFurther information can be found in `Toolchain Roadmap <https://docs.dipy.org/stable/devel/toolchain.html>`_.\n\nLicense\n=======\n\nDIPY is licensed under the terms of the BSD license.\nPlease see the `LICENSE file <https://github.com/dipy/dipy/blob/master/LICENSE>`_.\n\nContributing\n============\n\nWe welcome contributions from the community. Please read our `Contributing guidelines <https://github.com/dipy/dipy/blob/master/.github/CONTRIBUTING.md>`_.\n\nReference\n=========\n\n.. [DIPYREF] E. Garyfallidis, M. Brett, B. Amirbekian, A. Rokem,\n S. Van Der Walt, M. Descoteaux, I. Nimmo-Smith and DIPY contributors,\n \"DIPY, a library for the analysis of diffusion MRI data\",\n Frontiers in Neuroinformatics, vol. 8, p. 8, Frontiers, 2014.\n\n\n.. _`Scientific Python`: https://scientific-python.org/\n.. _`SPEC 0 \u2014 Minimum Supported Versions`: https://scientific-python.org/specs/spec-0000/\n",
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