| Name | eXtra-cli JSON |
| Version |
0.2.0
JSON |
| download |
| home_page | None |
| Summary | a project management tool for reproducible, portable, and streamlined bioinformatics analysis |
| upload_time | 2024-05-11 07:12:38 |
| maintainer | None |
| docs_url | None |
| author | Pranjal |
| requires_python | <4.0,>=3.11 |
| license | None |
| keywords |
bioinformatics
project management
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# eXtra
eXtra is a project management tool specifically designed for bioinformatics projects. It enables reproducible analysis of
large datasets, making it effortless to share and collaborate with others.
[](https://anaconda.org/bioconda/eXtra-cli)
[](https://opensource.org/licenses/MIT)
## Features
- [x] A human-readable configuration file
- [x] Git integration
- [x] Guaranteed reproducibility and portability
- [ ] Managing data, containers, and workflows, all in one place
## Installation
The easiest way to install eXtra is to use pip:
```bash
pip install eXtra-cli
```
## Quickstart
To get started with eXtra, use the `eXtra init` command to create a new project:
```bash
eXtra init my_project # This will by default create a Git repository
cd my_project
```
To add a new dataset to your project, use the `eXtra add` command:
```bash
eXtra add SRP123456 # ENCSR123ABC, GSE123456, etc. are also supported
```
You can also add privately hosted datasets:
```bash
eXtra add me@some_host:path/to/my_dataset ftp://ftp.example.com/another_dataset
```
If you share your project with others, they can easily retrieve the datasets you added:
```bash
eXtra install
```
For more information, please refer to [examples](examples/README.md).
## License
This project is licensed under the MIT license. See [LICENSE](LICENSE) for details.
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