fgpyo


Namefgpyo JSON
Version 1.0.0 PyPI version JSON
download
home_pagehttps://github.com/fulcrumgenomics/fgpyo
SummaryPython bioinformatics and genomics library
upload_time2025-02-12 20:09:05
maintainerNone
docs_urlNone
authorNils Homer
requires_python<4.0,>=3.9.0
licenseMIT
keywords bioinformatics
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            
[![Language][language-badge]][language-link]
[![Code Style][code-style-badge]][code-style-link]
[![Type Checked][type-checking-badge]][type-checking-link]
[![PEP8][pep-8-badge]][pep-8-link]
[![Code Coverage][code-coverage-badge]][code-coverage-link]
[![License][license-badge]][license-link]

---

[![Python package][python-package-badge]][python-package-link]
[![PyPI version][pypi-badge]][pypi-link]
[![PyPI download total][pypi-downloads-badge]][pypi-downloads-link]

---

[language-badge]:       http://img.shields.io/badge/language-python-brightgreen.svg
[language-link]:        http://www.python.org/
[code-style-badge]:     https://img.shields.io/badge/code%20style-black-000000.svg
[code-style-link]:      https://black.readthedocs.io/en/stable/ 
[type-checking-badge]:  http://www.mypy-lang.org/static/mypy_badge.svg
[type-checking-link]:   http://mypy-lang.org/
[pep-8-badge]:          https://img.shields.io/badge/code%20style-pep8-brightgreen.svg
[pep-8-link]:           https://www.python.org/dev/peps/pep-0008/
[code-coverage-badge]:  https://codecov.io/gh/fulcrumgenomics/fgpyo/branch/main/graph/badge.svg
[code-coverage-link]:   https://codecov.io/gh/fulcrumgenomics/fgpyo
[license-badge]:        http://img.shields.io/badge/license-MIT-blue.svg
[license-link]:         https://github.com/fulcrumgenomics/fgpyo/blob/main/LICENSE
[python-package-badge]: https://github.com/fulcrumgenomics/fgpyo/workflows/Python%20package/badge.svg
[python-package-link]:  https://github.com/fulcrumgenomics/fgpyo/actions?query=workflow%3A%22Python+package%22
[pypi-badge]:           https://badge.fury.io/py/fgpyo.svg
[pypi-link]:            https://pypi.python.org/pypi/fgpyo
[pypi-downloads-badge]: https://img.shields.io/pypi/dm/fgpyo
[pypi-downloads-link]:  https://pypi.python.org/pypi/fgpyo

# fgpyo

Quality of life improvements for Bioinformatics in Python.

<p>
<a href float="left"="https://fulcrumgenomics.com"><img src=".github/logos/fulcrumgenomics.svg" alt="Fulcrum Genomics" height="100"/></a>
</p>

[Visit us at Fulcrum Genomics](www.fulcrumgenomics.com) to learn more about how we can power your Bioinformatics with fgpyo and beyond.

<a href="mailto:contact@fulcrumgenomics.com?subject=[GitHub inquiry]"><img src="https://img.shields.io/badge/Email_us-brightgreen.svg?&style=for-the-badge&logo=gmail&logoColor=white"/></a>
<a href="https://www.fulcrumgenomics.com"><img src="https://img.shields.io/badge/Visit_Us-blue.svg?&style=for-the-badge&logo=wordpress&logoColor=white"/></a>

`pip install fgpyo`

**Requires python 3.9+**

See documentation on [fgpyo.readthedocs.org][rtd-link].


# Getting Setup

[Poetry][poetry-link] is used to manage the python development environment. 

A simple way to create an environment with the desired version of python and poetry is to use [conda][conda-link].  E.g.:

```bash
conda create -n fgpyo -c conda-forge "python>=3.9" poetry
conda activate fgpyo

# --all-extras is required to install `mkdocs` and associated dependencies,
# which are required for development 
poetry install --all-extras
```

[rtd-link]:    http://fgpyo.readthedocs.org/en/stable
[poetry-link]: https://github.com/python-poetry/poetry
[conda-link]:  https://docs.conda.io/en/latest/miniconda.html

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/fulcrumgenomics/fgpyo",
    "name": "fgpyo",
    "maintainer": null,
    "docs_url": null,
    "requires_python": "<4.0,>=3.9.0",
    "maintainer_email": null,
    "keywords": "bioinformatics",
    "author": "Nils Homer",
    "author_email": null,
    "download_url": "https://files.pythonhosted.org/packages/35/91/f6f75d9fad72f0fddaeb0b6b55d350d96f7d86e20a0253b377ca1b68fcba/fgpyo-1.0.0.tar.gz",
    "platform": null,
    "description": "\n[![Language][language-badge]][language-link]\n[![Code Style][code-style-badge]][code-style-link]\n[![Type Checked][type-checking-badge]][type-checking-link]\n[![PEP8][pep-8-badge]][pep-8-link]\n[![Code Coverage][code-coverage-badge]][code-coverage-link]\n[![License][license-badge]][license-link]\n\n---\n\n[![Python package][python-package-badge]][python-package-link]\n[![PyPI version][pypi-badge]][pypi-link]\n[![PyPI download total][pypi-downloads-badge]][pypi-downloads-link]\n\n---\n\n[language-badge]:       http://img.shields.io/badge/language-python-brightgreen.svg\n[language-link]:        http://www.python.org/\n[code-style-badge]:     https://img.shields.io/badge/code%20style-black-000000.svg\n[code-style-link]:      https://black.readthedocs.io/en/stable/ \n[type-checking-badge]:  http://www.mypy-lang.org/static/mypy_badge.svg\n[type-checking-link]:   http://mypy-lang.org/\n[pep-8-badge]:          https://img.shields.io/badge/code%20style-pep8-brightgreen.svg\n[pep-8-link]:           https://www.python.org/dev/peps/pep-0008/\n[code-coverage-badge]:  https://codecov.io/gh/fulcrumgenomics/fgpyo/branch/main/graph/badge.svg\n[code-coverage-link]:   https://codecov.io/gh/fulcrumgenomics/fgpyo\n[license-badge]:        http://img.shields.io/badge/license-MIT-blue.svg\n[license-link]:         https://github.com/fulcrumgenomics/fgpyo/blob/main/LICENSE\n[python-package-badge]: https://github.com/fulcrumgenomics/fgpyo/workflows/Python%20package/badge.svg\n[python-package-link]:  https://github.com/fulcrumgenomics/fgpyo/actions?query=workflow%3A%22Python+package%22\n[pypi-badge]:           https://badge.fury.io/py/fgpyo.svg\n[pypi-link]:            https://pypi.python.org/pypi/fgpyo\n[pypi-downloads-badge]: https://img.shields.io/pypi/dm/fgpyo\n[pypi-downloads-link]:  https://pypi.python.org/pypi/fgpyo\n\n# fgpyo\n\nQuality of life improvements for Bioinformatics in Python.\n\n<p>\n<a href float=\"left\"=\"https://fulcrumgenomics.com\"><img src=\".github/logos/fulcrumgenomics.svg\" alt=\"Fulcrum Genomics\" height=\"100\"/></a>\n</p>\n\n[Visit us at Fulcrum Genomics](www.fulcrumgenomics.com) to learn more about how we can power your Bioinformatics with fgpyo and beyond.\n\n<a href=\"mailto:contact@fulcrumgenomics.com?subject=[GitHub inquiry]\"><img src=\"https://img.shields.io/badge/Email_us-brightgreen.svg?&style=for-the-badge&logo=gmail&logoColor=white\"/></a>\n<a href=\"https://www.fulcrumgenomics.com\"><img src=\"https://img.shields.io/badge/Visit_Us-blue.svg?&style=for-the-badge&logo=wordpress&logoColor=white\"/></a>\n\n`pip install fgpyo`\n\n**Requires python 3.9+**\n\nSee documentation on [fgpyo.readthedocs.org][rtd-link].\n\n\n# Getting Setup\n\n[Poetry][poetry-link] is used to manage the python development environment. \n\nA simple way to create an environment with the desired version of python and poetry is to use [conda][conda-link].  E.g.:\n\n```bash\nconda create -n fgpyo -c conda-forge \"python>=3.9\" poetry\nconda activate fgpyo\n\n# --all-extras is required to install `mkdocs` and associated dependencies,\n# which are required for development \npoetry install --all-extras\n```\n\n[rtd-link]:    http://fgpyo.readthedocs.org/en/stable\n[poetry-link]: https://github.com/python-poetry/poetry\n[conda-link]:  https://docs.conda.io/en/latest/miniconda.html\n",
    "bugtrack_url": null,
    "license": "MIT",
    "summary": "Python bioinformatics and genomics library",
    "version": "1.0.0",
    "project_urls": {
        "Homepage": "https://github.com/fulcrumgenomics/fgpyo",
        "Repository": "https://github.com/fulcrumgenomics/fgpyo"
    },
    "split_keywords": [
        "bioinformatics"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "a644bed3393bd04cd0ff023509b5e0c85750d84300c5ee41298313bbd8d413f4",
                "md5": "ebfaad2d6505fbec13b46f6d4c4cdb90",
                "sha256": "f304b52e3c0b7295c2ba53f490041139d152ab374fde1522dac60797f4d54409"
            },
            "downloads": -1,
            "filename": "fgpyo-1.0.0-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "ebfaad2d6505fbec13b46f6d4c4cdb90",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": "<4.0,>=3.9.0",
            "size": 73120,
            "upload_time": "2025-02-12T20:09:01",
            "upload_time_iso_8601": "2025-02-12T20:09:01.973175Z",
            "url": "https://files.pythonhosted.org/packages/a6/44/bed3393bd04cd0ff023509b5e0c85750d84300c5ee41298313bbd8d413f4/fgpyo-1.0.0-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "3591f6f75d9fad72f0fddaeb0b6b55d350d96f7d86e20a0253b377ca1b68fcba",
                "md5": "3ad1ba8183afc7a8b889a4e2b0712f72",
                "sha256": "87dae25cb19d5eec3f1e0de928ece15b76f667ab29de862302adbe3c975ee737"
            },
            "downloads": -1,
            "filename": "fgpyo-1.0.0.tar.gz",
            "has_sig": false,
            "md5_digest": "3ad1ba8183afc7a8b889a4e2b0712f72",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": "<4.0,>=3.9.0",
            "size": 65641,
            "upload_time": "2025-02-12T20:09:05",
            "upload_time_iso_8601": "2025-02-12T20:09:05.352996Z",
            "url": "https://files.pythonhosted.org/packages/35/91/f6f75d9fad72f0fddaeb0b6b55d350d96f7d86e20a0253b377ca1b68fcba/fgpyo-1.0.0.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2025-02-12 20:09:05",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "fulcrumgenomics",
    "github_project": "fgpyo",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "lcname": "fgpyo"
}
        
Elapsed time: 8.29035s