geniml

Name	geniml JSON
Version	0.5.2 JSON
	download
home_page	https://docs.bedbase.org/geniml/
Summary	Genomic interval toolkit
upload_time	2024-12-03 19:18:58
maintainer	None
docs_url	None
author	Nathan Sheffield
requires_python	None
license	BSD2
keywords	bioinformatics sequencing ngs
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Genomic interval machine learning (geniml)

Geniml is a python package for building machine learning models of genomic interval data (BED files). It also includes ancillary functions to support other types of analyses of genomic interval data.

Documentation is hosted at <https://docs.bedbase.org/geniml/>.


## Installation
### To install `geniml` use this commands.

Without specifying dependencies, the default dependencies will be installed, 
which DO NOT include machine learning (ML) or heavy processing libraries.


From pypi:
```
pip install geniml
```
or install the latest version from the GitHub repository:
```
pip install git+https://github.com/databio/geniml.git
```

### To install Machine learning dependencies use this command:

From pypi:
```
pip install geniml[ml]
```


## Development

Run tests (from `/tests`) with `pytest`. Please read the [contributor guide](https://docs.bedbase.org/geniml/contributing/) to contribute.


            

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