idea-bio

Name	idea-bio JSON
Version	0.2.6 JSON
	download
home_page	https://github.com/noamteyssier/idea
Summary	Integrated Differential Expression and Annotation
upload_time	2024-11-22 01:37:39
maintainer	None
docs_url	None
author	Noam Teyssier
requires_python	<4.0,>=3.8
license	MIT
keywords	bioinformatics differential expression annotation networks
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # IDEA

## Integrated Differential Expression and Annotation

<p align="center">
    <img src="https://github.com/noamteyssier/idea/blob/main/assets/logo.png?raw=true" width="50%" />
</p>

This is a python module to perform GO analysis using [Enrichr](https://maayanlab.cloud/Enrichr/)
and visualize the [bipartite graph](https://en.wikipedia.org/wiki/Bipartite_graph)
of terms and genes as an interactive force-directed graph.

This uses [`pvsvg`](https://github.com/noamteyssier/pvsvg) as the python wrapper to the
force-directed graph visualization javascript library [`vis.js`](https://visjs.github.io/vis-network/docs/network/)
and [`ggetrs`](https://noamteyssier.github.io/ggetrs)
to perform the gene set enrichment using the [`Enrichr`](https://maayanlab.cloud/Enrichr/) API.

## Installation and Usage

Checkout my [documentation](https://idea-bio.readthedocs.io/en/latest/index.html)
for information on installation, usage, and recipes for analysis.


            

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