# IDEA
## Integrated Differential Expression and Annotation
<p align="center">
<img src="https://github.com/noamteyssier/idea/blob/main/assets/logo.png?raw=true" width="50%" />
</p>
This is a python module to perform GO analysis using [Enrichr](https://maayanlab.cloud/Enrichr/)
and visualize the [bipartite graph](https://en.wikipedia.org/wiki/Bipartite_graph)
of terms and genes as an interactive force-directed graph.
This uses [`pvsvg`](https://github.com/noamteyssier/pvsvg) as the python wrapper to the
force-directed graph visualization javascript library [`vis.js`](https://visjs.github.io/vis-network/docs/network/)
and [`ggetrs`](https://noamteyssier.github.io/ggetrs)
to perform the gene set enrichment using the [`Enrichr`](https://maayanlab.cloud/Enrichr/) API.
## Installation and Usage
Checkout my [documentation](https://idea-bio.readthedocs.io/en/latest/index.html)
for information on installation, usage, and recipes for analysis.
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