| Name | netneurotools JSON |
| Version |
0.2.5
JSON |
| download |
| home_page | None |
| Summary | A toolbox for network neuroscience |
| upload_time | 2024-11-08 17:18:26 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.8 |
| license | BSD 3-Clause License Copyright (c) 2018, Network Neuroscience Lab All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| keywords |
network neuroscience
connectomics
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
bctpy
matplotlib
nibabel
nilearn
numpy
scikit-learn
scipy
matplotlib
tqdm
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
netneurotools: Tools for network neuroscience
=============================================
|
.. .. image:: https://zenodo.org/badge/375755159.svg
.. :target: https://zenodo.org/badge/latestdoi/375755159
.. :alt: Zenodo record
.. image:: https://img.shields.io/pypi/v/netneurotools
:target: https://pypi.python.org/pypi/netneurotools/
:alt: Latest PyPI version
.. image:: https://img.shields.io/badge/docker-netneurolab/netneurotools-brightgreen.svg?logo=docker&style=flat
:target: https://hub.docker.com/r/netneurolab/netneurotools/tags/
:alt: Latest Docker image
.. image:: https://github.com/netneurolab/netneurotools/actions/workflows/tests.yml/badge.svg
:target: https://github.com/netneurolab/netneurotools/actions/workflows/tests.yml
:alt: run-tests status
.. image:: https://github.com/netneurolab/netneurotools/actions/workflows/docs.yml/badge.svg
:target: https://netneurolab.github.io/netneurotools/
:alt: deploy-docs status
|
This toolbox is a collection of functions written in Python that get frequent
usage in the `Network Neuroscience Lab <netneurolab.github.io/>`_, housed in
the `Brain Imaging Centre <https://www.mcgill.ca/bic/home>`_ at
`McGill University <https://www.mcgill.ca/>`_.
.. _installation:
Installation
------------
Install directly from PyPi with :code:`pip install netneurotools` or install the main branch with
.. code-block:: bash
git clone https://github.com/netneurolab/netneurotools.git
cd netneurotools
pip install .
.. _features:
Features
--------
* Network neuroscience metrics: up-to-date and optimized
* Network communication
* Null networks
* Brain plotting functions: easy to use and customize
* Surface visualization
`plot_fsaverage <https://netneurotools.readthedocs.io/en/latest/generated/netneurotools.plotting.plot_fsaverage.html>`_
and `plot_fslr <https://netneurotools.readthedocs.io/en/latest/generated/netneurotools.plotting.plot_fslr.html>`_
* 3D point brain `plot_point_brain <https://netneurotools.readthedocs.io/en/latest/generated/netneurotools.plotting.plot_point_brain.html>`_
* Sorted communities `plot_mod_heatmap <https://netneurotools.readthedocs.io/en/latest/generated/netneurotools.plotting.plot_mod_heatmap.html>`_
* Statistics functions
* Dominance analysis `get_dominance_stats <https://netneurotools.readthedocs.io/en/latest/generated/netneurotools.stats.get_dominance_stats.html>`_
* Fetchers for common datasets
* Utilities for working with FreeSurfer and CIVET
Check out our `documentation <https://netneurotools.readthedocs.io/en/latest>`_
for more information!
.. _development:
Development
-----------
This package has been developed by members of the Network Neuroscience Lab in
pursuit of their research. While we've made every effort to ensure these tools
work and have some documentation, there is always room for improvement! If
you've found a bug, are experiencing a problem, or have a question, create a
new `issue <https://github.com/netneurolab/netneurotools/issues>`_ with some
information about it and one of our team members will do our best to help you.
.. _licensing:
License Information
-------------------
This codebase is licensed under the 3-clause BSD license. The full license can
be found in the `LICENSE <https://github.com/netneurolab/netneurotools/blob/
master/LICENSE>`_ file in the ``netneurotools`` distribution.
All trademarks referenced herein are property of their respective holders.
.. |sparkles| replace:: ✨
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