.. image:: https://github.com/rkimoakbioinformatics/oakvar/raw/master/oakvar/gui/websubmit/images/logo.png
:width: 300
:alt: OakVar logo
OakVar: Genomic Variant Analysis Platform
*****************************************
Mission
=======
* OakVar is a bridge between cutting-edge genomics research and everyday people.
* OakVar democratizes access to genomics knowledge for all.
What it does
============
* Annotate genomic variants with diverse annotation sources.
* Make databases of annotated variants.
* Query annotated variants with filter sets.
* Make reports in diverse formats.
* Visualize annotated variants with graphical user interface.
* Works via CLI and GUI.
* Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.
* Connect genomic data to AI/ML models.
Internship
===========================
The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to info@oakbioinformatics.com.
Resources
=========
Ready to start? `OakVar Documentation`_
.. _OakVar Documentation: https://docs.oakvar.com
`Subscribe to the mailing list`_: Be in the loop and notified of the new releases and news of OakVar.
.. _Subscribe to the mailing list: https://dashboard.mailerlite.com/forms/21170/56038572068701589/share
Medium: https://medium.com/oakvar
Discord: https://discord.gg/wZfkTMKTjG
Reddit: https://www.reddit.com/r/oakvar
Email: info@oakbioinformatics.com
Many Thanks to Our Sponsors
=================================
Organizational Sponsors
-----------------------
.. image:: https://dna-seq.github.io/dna-seq/just_dna_seq.png
:width: 225
:alt: Just DNA-Seq
:target: https://github.com/dna-seq
Individual Sponsors
-------------------
.. image:: https://avatars.githubusercontent.com/u/110073399?v=4
:width: 50
:alt: RegenCenter
:target: https://github.com/RegenCenter
OakVar is in CodeX
******************
.. image:: https://storage.oakvar.com/oakvar-public/codex.png
:width: 400
:alt: CodeX logo
.. _LICENSE: https://github.com/rkimoakbioinformatics/oakvar/blob/master/LICENSE
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