plot-phylo


Nameplot-phylo JSON
Version 0.1.9 PyPI version JSON
download
home_pagehttps://github.com/KatyBrown/plot_phylo
SummaryModule to draw a phylogenetic tree using matplotlib
upload_time2024-04-12 13:35:55
maintainerNone
docs_urlNone
authorKaty Brown, Duncan Cross
requires_pythonNone
licenseNone
keywords
VCS
bugtrack_url
requirements matplotlib ete3
Travis-CI No Travis.
coveralls test coverage
            ![example workflow](https://github.com/KatyBrown/plot_phylo/actions/workflows/main.yml/badge.svg)

# plot_phylo

![Illustration](./examples/layered.png "Illustration")

This module allows the user to plot a phylogenetic tree on an existing matplotlib axis.

This means that:
* Phylogenies can be incorporated into existing plots.
* Annotations can be added using standard matplotlib functionality.
* Plots can be output in png, pdf, svg or tiff formats.
* Automatically generated and updated figures can include phylogenies

Full documentation is available via [ReadTheDocs](https://plot-phylo.readthedocs.io/en/latest/index.html).

# Installation

**Requirements**

* python >= 3.6
* matplotlib >= 2.1.1
* ete3 >= 3.1.0

The module can be installed using pip

`pip install plot_phylo`

You can also download the latest release [here](https://github.com/KatyBrown/plot_phylo/releases/latest)

Or clone the GitHub repository directly.

`git clone git@github.com:KatyBrown/plot_phylo.git`

            

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