PyDigger - unearthing stuff about Python


NameVersionSummarydate
LAML 0.0.2 LAML: Lineage Analysis via Maximum Likelihood 2024-03-19 03:27:09
treeswift 1.1.40 TreeSwift: Fast tree module for Python 2 and 3 2024-03-18 21:27:22
SATO 0.1.5 Python package that generates consensus sequence from the forward and reverse sequences, performs multiple sequence alignment of the fasta sequences, and generates phylogenetic trees using Bayesian and Maximum Likelihood Methods 2024-03-15 06:34:58
teiphy 0.1.10 Converts TEI XML collations to NEXUS and other formats 2024-03-12 02:48:38
bacpage 2024.3.8 An easy-to-use pipeline for the assembly and analysis of bacterial genomes 2024-03-11 12:53:35
scmail 1.0.9 sc-MAIL: single-cell Maximum-likelihood Ancestral Inference for Lineage-tracing 2024-01-31 19:29:25
phytreeviz 0.2.0 Simple phylogenetic tree visualization python package 2024-01-29 10:22:39
treesimulator 0.1.9 Simulation of rooted phylogenetic trees under a given Multitype Birth–Death model. 2024-01-15 13:16:35
commonnexus 1.9.2 A nexus (phylogenetics) file reader and writer (.nex, .trees) 2023-11-26 12:00:56
phasty 0.5.3 A Python interface for PHAST (phylogenetic analysis with space/time models). 2023-11-15 05:24:28
torchtree-scipy 1.0.0 Plugin for using scipy in torchtree 2023-11-14 04:57:55
auto-phylo-pipeliner 1.0.1 A GUI to create auto-phylo pipelines. 2023-10-31 15:53:53
tskit 0.5.6 The tree sequence toolkit. 2023-10-10 10:59:18
cafeplotter 0.2.0 A tool for plotting CAFE5 gene family expansion/contraction result 2023-09-22 12:59:36
TreeProfiler 1.2.0 TreeProfiler is command-line tool for profiling metadata table into phylogenetic tree with descriptive analysis and output visualization 2023-09-21 09:17:48
DendroPy 4.6.1 A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. 2023-06-09 05:34:21
phylomatcher 0.3.2 A tool for parsing and extracting taxon synonyms. 2023-05-12 18:25:51
taxomatcher 0.2 A tool for parsing and extracting taxon synonyms. 2023-05-05 19:26:14
DendroPy-calver 2023.330.2 A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. Calendar-versioned fork tracking DendroPy main branch. 2023-03-30 06:22:01
phylostan 1.0.5.post1 Phylogenetic inference with Stan 2022-12-07 03:23:54
hourdayweektotal
6621589571192620
Elapsed time: 0.75287s