| Name | prymer JSON |
| Version |
3.0.0
JSON |
| download |
| home_page | None |
| Summary | Python primer design library |
| upload_time | 2025-01-14 20:05:47 |
| maintainer | None |
| docs_url | None |
| author | Yossi Farjoun |
| requires_python | <4.0,>=3.11 |
| license | MIT |
| keywords |
bioinformatics
genomics
dna
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# Python Primer Design Library
[![Python Versions][language-badge]][language-link]
[![License][license-badge]][license-link]
[![MyPy Checked][type-checking-badge]][type-checking-link]
[![Poetry][poetry-badge]][poetry-link]
[![Ruff][ruff-badge]][ruff-link]
[language-badge]: https://img.shields.io/badge/python-3.11_|_3.12-blue
[language-link]: http://www.python.org/
[license-badge]: http://img.shields.io/badge/license-MIT-blue.svg
[license-link]: https://github.com/fulcrumgenomics/prymer/blob/main/LICENSE
[type-checking-badge]: http://www.mypy-lang.org/static/mypy_badge.svg
[type-checking-link]: http://mypy-lang.org/
[poetry-badge]: https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json
[poetry-link]: https://python-poetry.org/
[ruff-badge]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json
[ruff-link]: https://docs.astral.sh/ruff/
[![Install with Bioconda][bioconda-badge]][bioconda-link]
[![PyPI version][pypi-badge]][pypi-link]
[bioconda-badge]: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?label=Install%20with
[bioconda-link]: http://bioconda.github.io/recipes/prymer/README.html
[pypi-badge]: https://img.shields.io/pypi/v/prymer?label=Install%20with%20PyPi
[pypi-link]: https://pypi.python.org/pypi/prymer
[![Bioconda][bioconda-dl-badge]][bioconda-dl-link]
[![PyPI download total][pypi-downloads-badge]][pypi-downloads-link]
[bioconda-dl-badge]: https://img.shields.io/conda/dn/bioconda/prymer.svg?label=Bioconda%20downloads
[bioconda-dl-link]: https://anaconda.org/bioconda/prymer
[pypi-downloads-badge]: https://img.shields.io/pypi/dm/prymer.svg?label=PyPi%20downloads
[pypi-downloads-link]: https://pypi.python.org/pypi/prymer
[![tests][python-tests-badge]][python-tests-link]
[![publish prymer][publish-prymer-badge]][publish-prymer-link]
[![Code Coverage][code-coverage-badge]][code-coverage-link]
[publish-prymer-badge]: https://github.com/fulcrumgenomics/prymer/actions/workflows/publish_prymer.yml/badge.svg
[publish-prymer-link]: https://github.com/fulcrumgenomics/prymer/actions/workflows/publish_prymer.yml
[python-tests-badge]: https://github.com/fulcrumgenomics/prymer/actions/workflows/tests.yml/badge.svg
[python-tests-link]: https://github.com/fulcrumgenomics/prymer/actions/workflows/tests.yml
[code-coverage-badge]: https://codecov.io/gh/fulcrumgenomics/prymer/branch/main/graph/badge.svg
[code-coverage-link]: https://codecov.io/gh/fulcrumgenomics/prymer
## Recommended Installation
The package `prymer` requires installation of [Primer3](https://github.com/primer3-org/primer3) and [interactive `bwa`](https://github.com/fulcrumgenomics/bwa-aln-interactive).
To satisfy these requirements, it is recommended to install using [bioconda](https://bioconda.github.io/):
```console
mamba install -c bioconda prymer
```
## Development and Testing
See the [developer's instructions][developers-instructions-link] for more information.
[developers-instructions-link]: https://prymer.readthedocs.io/en/latest/installation-and-developers-documentation.html#installation-for-development
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