<br><br>
[](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/build-wheels.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-linux.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-windows.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-macos.yml)
[](https://pypi.org/project/pyhelios3d/)
<div align="center">
<img src="https://raw.githubusercontent.com/PlantSimulationLab/PyHelios/master/docs/images/PyHelios_logo_whiteborder.png" alt="" width="300" />
</div>
# PyHelios
Cross-platform Python bindings for [Helios](https://github.com/PlantSimulationLab/Helios) 3D plant simulation library.
PyHelios provides a Python interface to the powerful Helios C++ library for 3D physical simulation of plant and environmental systems. It enables plant modeling, geometry manipulation, and biophysical simulations including GPU-accelerated radiation transfer, photosynthesis, and plant architecture modeling.
📖 **[Complete Documentation](https://plantsimulationlab.github.io/PyHelios/)**
⚠️Note that this is a work in progress. Not all Helios functionality has been implemented in PyHelios ⚠️
⚠️Help make PyHelios better by reporting issues: https://github.com/PlantSimulationLab/PyHelios/issues ⚠️
See the Helios C++ documentation for a more in-depth description of Helios: https://baileylab.ucdavis.edu/software/helios
## Quick Start
### Installation
**Easy Install (Recommended):**
```bash
pip install pyhelios3d
```
This installs pre-built PyHelios with platform-appropriate plugins:
- **macOS (Apple Silicon)**: All plugins except GPU-accelerated ones (automatically detected)
- **macOS (Intel)**: Pre-built wheels not available - please [build from source](#build-from-source)
- **Windows/Linux**: All plugins including GPU acceleration (when hardware supports it)
PyHelios will gracefully handle GPU features - if you don't have CUDA-capable hardware, GPU plugins will display helpful error messages with setup instructions.
> **Note for Intel Mac Users**: Due to GitHub Actions infrastructure limitations, pre-built wheels are only available for Apple Silicon Macs. Intel Mac users must build PyHelios from source following the [macOS build instructions](#macos) below.
### Build from Source
If you need to customize plugins or build from source:
#### Windows
**Prerequisites:**
- Visual Studio 2019+ or Build Tools for Visual Studio
- Python 3.7+
```bash
# Clone repository
git clone --recursive https://github.com/PlantSimulationLab/PyHelios.git
cd PyHelios/
# Build native libraries (optional - pre-built binaries included)
./build_scripts/build_helios
# Install PyHelios
pip install -e .
```
#### macOS
**Prerequisites:**
- Xcode command line tools
- Python 3.7+
```bash
# Install Xcode command line tools
xcode-select --install
# Clone repository
git clone --recursive https://github.com/PlantSimulationLab/PyHelios.git
cd PyHelios/
# Install dependencies and build native libraries
source helios-core/utilities/dependencies.sh
./build_scripts/build_helios
# Install PyHelios
pip install -e .
```
#### Linux (Ubuntu/Debian)
**Prerequisites:**
- Build essentials
- CMake
- Python 3.7+
```bash
# Clone repository
git clone --recursive https://github.com/PlantSimulationLab/PyHelios.git
cd PyHelios/
# Install dependencies and build native libraries
source helios-core/utilities/dependencies.sh
./build_scripts/build_helios
# Install PyHelios
pip install -e .
```
### GPU Features Setup
If you want to use GPU-accelerated features (radiation modeling, aerial LiDAR), ensure you have:
**Requirements:**
- NVIDIA GPU with CUDA support
- NVIDIA drivers installed
- CUDA Toolkit (version 11.8 or 12.x)
**Verification:**
```bash
nvidia-smi # Should show GPU information
nvcc --version # Should show CUDA compiler version
```
**Testing GPU Features:**
```python
from pyhelios import Context, RadiationModel
context = Context()
try:
radiation = RadiationModel(context)
print("GPU radiation modeling available!")
except RuntimeError as e:
print(f"GPU features unavailable: {e}")
```
If GPU features fail, PyHelios will provide specific guidance on installation and setup requirements.
### First Example
```python
from pyhelios import Context
from pyhelios.types import *
# Create simulation context
context = Context()
# Add a patch primitive
center = vec3(2, 3, 4)
size = vec2(1, 1)
color = RGBcolor(0.25, 0.25, 0.25)
patch_uuid = context.addPatch(center=center, size=size, color=color)
print(f"Created patch: {patch_uuid}")
```
## Documentation
| Section | Description |
|---------|-------------|
| **[Getting Started](https://plantsimulationlab.github.io/PyHelios/getting_started.html)** | Installation, setup, and first steps |
| **[User Guide](https://plantsimulationlab.github.io/PyHelios/user_guide.html)** | Core concepts, API reference, and examples |
| **[Cross-Platform](https://plantsimulationlab.github.io/PyHelios/cross_platform.html)** | Platform-specific usage and deployment |
| **[Plugin System](https://plantsimulationlab.github.io/PyHelios/plugin_system.html)** | Available plugins and configuration |
## Key Features
- **Cross-platform**: Windows, macOS, and Linux support
- **Plant modeling**: WeberPennTree procedural generation
- **GPU acceleration**: OptiX-powered radiation simulation
- **3D visualization**: OpenGL-based real-time rendering
- **Flexible plugins**: Currently 5 plug-ins implemented
- **Development mode**: Mock mode for development without native libraries
## Updating PyHelios
To update your PyHelios installation with the latest changes:
```bash
# Update main repository and submodules recursively
git pull --recurse-submodules
# Alternative: Update main repo first, then submodules
git pull
git submodule update --init --recursive
# Rebuild native libraries after updates (recommended)
./build_scripts/build_helios --clean
# Reinstall PyHelios
pip install -e .
```
**Important**: Always use `--recurse-submodules` or manually update submodules when pulling updates, as PyHelios depends on the `helios-core` submodule for C++ functionality.
## Quick Commands
```bash
# Test installation (uses subprocess isolation for robust testing)
pytest
# Check plugin status
python -m pyhelios.plugins status
# Interactive plugin selection
./build_scripts/build_helios --interactive
```
## Support
- **Documentation**: https://plantsimulationlab.github.io/PyHelios/
- **Issues**: [GitHub Issues](https://github.com/PlantSimulationLab/PyHelios/issues)
- **Helios C++ Docs**: https://baileylab.ucdavis.edu/software/helios
---
**Note**: This project is in active development. The API may change quickly - see `docs/CHANGELOG.md` for updates.
Raw data
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"description": "<br><br>\n\n[](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/build-wheels.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-linux.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-windows.yml) [](https://github.com/PlantSimulationLab/PyHelios/actions/workflows/pytest-macos.yml)\n[](https://pypi.org/project/pyhelios3d/)\n\n<div align=\"center\">\n <img src=\"https://raw.githubusercontent.com/PlantSimulationLab/PyHelios/master/docs/images/PyHelios_logo_whiteborder.png\" alt=\"\" width=\"300\" />\n</div>\n\n# PyHelios\n\nCross-platform Python bindings for [Helios](https://github.com/PlantSimulationLab/Helios) 3D plant simulation library.\n\nPyHelios provides a Python interface to the powerful Helios C++ library for 3D physical simulation of plant and environmental systems. It enables plant modeling, geometry manipulation, and biophysical simulations including GPU-accelerated radiation transfer, photosynthesis, and plant architecture modeling.\n\n\ud83d\udcd6 **[Complete Documentation](https://plantsimulationlab.github.io/PyHelios/)**\n\n\u26a0\ufe0fNote that this is a work in progress. Not all Helios functionality has been implemented in PyHelios \u26a0\ufe0f\n\u26a0\ufe0fHelp make PyHelios better by reporting issues: https://github.com/PlantSimulationLab/PyHelios/issues \u26a0\ufe0f\n\nSee the Helios C++ documentation for a more in-depth description of Helios: https://baileylab.ucdavis.edu/software/helios\n\n## Quick Start\n\n### Installation\n\n**Easy Install (Recommended):**\n```bash\npip install pyhelios3d\n```\n\nThis installs pre-built PyHelios with platform-appropriate plugins:\n- **macOS (Apple Silicon)**: All plugins except GPU-accelerated ones (automatically detected)\n- **macOS (Intel)**: Pre-built wheels not available - please [build from source](#build-from-source)\n- **Windows/Linux**: All plugins including GPU acceleration (when hardware supports it)\n\nPyHelios will gracefully handle GPU features - if you don't have CUDA-capable hardware, GPU plugins will display helpful error messages with setup instructions.\n\n> **Note for Intel Mac Users**: Due to GitHub Actions infrastructure limitations, pre-built wheels are only available for Apple Silicon Macs. Intel Mac users must build PyHelios from source following the [macOS build instructions](#macos) below.\n\n### Build from Source\n\nIf you need to customize plugins or build from source:\n\n#### Windows\n\n**Prerequisites:**\n- Visual Studio 2019+ or Build Tools for Visual Studio\n- Python 3.7+\n\n```bash\n# Clone repository\ngit clone --recursive https://github.com/PlantSimulationLab/PyHelios.git\ncd PyHelios/\n\n# Build native libraries (optional - pre-built binaries included)\n./build_scripts/build_helios\n\n# Install PyHelios\npip install -e .\n```\n\n#### macOS\n\n**Prerequisites:**\n- Xcode command line tools\n- Python 3.7+\n\n```bash\n# Install Xcode command line tools\nxcode-select --install\n\n# Clone repository\ngit clone --recursive https://github.com/PlantSimulationLab/PyHelios.git\ncd PyHelios/\n\n# Install dependencies and build native libraries\nsource helios-core/utilities/dependencies.sh\n./build_scripts/build_helios\n\n# Install PyHelios\npip install -e .\n```\n\n#### Linux (Ubuntu/Debian)\n\n**Prerequisites:**\n- Build essentials\n- CMake\n- Python 3.7+\n\n```bash\n# Clone repository\ngit clone --recursive https://github.com/PlantSimulationLab/PyHelios.git\ncd PyHelios/\n\n# Install dependencies and build native libraries\nsource helios-core/utilities/dependencies.sh\n./build_scripts/build_helios\n\n# Install PyHelios\npip install -e .\n```\n\n### GPU Features Setup\n\nIf you want to use GPU-accelerated features (radiation modeling, aerial LiDAR), ensure you have:\n\n**Requirements:**\n- NVIDIA GPU with CUDA support\n- NVIDIA drivers installed\n- CUDA Toolkit (version 11.8 or 12.x)\n\n**Verification:**\n```bash\nnvidia-smi # Should show GPU information\nnvcc --version # Should show CUDA compiler version\n```\n\n**Testing GPU Features:**\n```python\nfrom pyhelios import Context, RadiationModel\n\ncontext = Context()\ntry:\n radiation = RadiationModel(context)\n print(\"GPU radiation modeling available!\")\nexcept RuntimeError as e:\n print(f\"GPU features unavailable: {e}\")\n```\n\nIf GPU features fail, PyHelios will provide specific guidance on installation and setup requirements.\n\n### First Example\n\n```python\nfrom pyhelios import Context\nfrom pyhelios.types import *\n\n# Create simulation context\ncontext = Context()\n\n# Add a patch primitive\ncenter = vec3(2, 3, 4)\nsize = vec2(1, 1)\ncolor = RGBcolor(0.25, 0.25, 0.25)\npatch_uuid = context.addPatch(center=center, size=size, color=color)\n\nprint(f\"Created patch: {patch_uuid}\")\n```\n\n## Documentation\n\n| Section | Description |\n|---------|-------------|\n| **[Getting Started](https://plantsimulationlab.github.io/PyHelios/getting_started.html)** | Installation, setup, and first steps |\n| **[User Guide](https://plantsimulationlab.github.io/PyHelios/user_guide.html)** | Core concepts, API reference, and examples |\n| **[Cross-Platform](https://plantsimulationlab.github.io/PyHelios/cross_platform.html)** | Platform-specific usage and deployment |\n| **[Plugin System](https://plantsimulationlab.github.io/PyHelios/plugin_system.html)** | Available plugins and configuration |\n\n## Key Features\n\n- **Cross-platform**: Windows, macOS, and Linux support\n- **Plant modeling**: WeberPennTree procedural generation \n- **GPU acceleration**: OptiX-powered radiation simulation\n- **3D visualization**: OpenGL-based real-time rendering\n- **Flexible plugins**: Currently 5 plug-ins implemented\n- **Development mode**: Mock mode for development without native libraries\n\n## Updating PyHelios\n\nTo update your PyHelios installation with the latest changes:\n\n```bash\n# Update main repository and submodules recursively\ngit pull --recurse-submodules\n\n# Alternative: Update main repo first, then submodules\ngit pull\ngit submodule update --init --recursive\n\n# Rebuild native libraries after updates (recommended)\n./build_scripts/build_helios --clean\n\n# Reinstall PyHelios\npip install -e .\n```\n\n**Important**: Always use `--recurse-submodules` or manually update submodules when pulling updates, as PyHelios depends on the `helios-core` submodule for C++ functionality.\n\n## Quick Commands\n\n```bash\n# Test installation (uses subprocess isolation for robust testing)\npytest\n\n# Check plugin status \npython -m pyhelios.plugins status\n\n# Interactive plugin selection\n./build_scripts/build_helios --interactive\n```\n\n## Support\n\n- **Documentation**: https://plantsimulationlab.github.io/PyHelios/\n- **Issues**: [GitHub Issues](https://github.com/PlantSimulationLab/PyHelios/issues)\n- **Helios C++ Docs**: https://baileylab.ucdavis.edu/software/helios\n\n---\n\n**Note**: This project is in active development. The API may change quickly - see `docs/CHANGELOG.md` for updates.\n",
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