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# PyLMeasure: A Python Wrapper for LMeasure.
[PyLMeasure](https://pypi.org/project/pylmeasure/) is a Python wrapper library for the [command-line interface](http://cng.gmu.edu:8080/Lm/help/cmdLineUsageDoc.html) of the neuronal morphology analysis tool [L-Measure](http://cng.gmu.edu:8080/Lm/help/index.htm).
# Installation
To install the library, simply type in `pip install pylmeasure` in your terminal.
The above command includes the necessary binaries -- no need to download L-Measure separatelly or install Java.
# Usage
The basic usage is:
```
from pylmeasure import *
# Specify the L-Measure to compute, full list: http://cng.gmu.edu:8080/Lm/help/index.htm
LMOutput = getOneMeasure('Surface', 'path/to/cell.swc')
print("Surface area:", LMOutput["TotalSum"])
```
For more examples, see [this Jupyter notebook](https://github.com/JustasB/pylmeasure/blob/master/PyLMeasure%20Usage.ipynb).
# Issues
If you encounter an issue, first make sure it's not due to L-Measure itself -- this library simply wraps the L-Measure executables. If it is, please contact the [L-Measure team](http://cng.gmu.edu:8080/Lm/). If the issue is with this library, please create an [issue on Github](https://github.com/JustasB/pylmeasure/issues).
# Contributing
To contribute, please [open an issue](https://github.com/JustasB/pylmeasure/issues) first and discuss your plan for contributing. Then fork this repository and commit [a pull-request](https://help.github.com/en/articles/about-pull-requests) with your changes.
# Acknowledgements
This wrapper library project was initialy started by [Ajayrama Kumaraswamy](https://github.com/ajkswamy). View [the original source](https://github.com/ajkswamy/python-Lmeasure).
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"description": "[](https://travis-ci.com/JustasB/pylmeasure)\n[](https://codecov.io/gh/JustasB/pylmeasure)\n[](https://badge.fury.io/py/pylmeasure)\n\n# PyLMeasure: A Python Wrapper for LMeasure.\n\n[PyLMeasure](https://pypi.org/project/pylmeasure/) is a Python wrapper library for the [command-line interface](http://cng.gmu.edu:8080/Lm/help/cmdLineUsageDoc.html) of the neuronal morphology analysis tool [L-Measure](http://cng.gmu.edu:8080/Lm/help/index.htm).\n\n# Installation\n\nTo install the library, simply type in `pip install pylmeasure` in your terminal.\n\nThe above command includes the necessary binaries -- no need to download L-Measure separatelly or install Java.\n\n# Usage\n\nThe basic usage is:\n\n```\nfrom pylmeasure import *\n\n# Specify the L-Measure to compute, full list: http://cng.gmu.edu:8080/Lm/help/index.htm\nLMOutput = getOneMeasure('Surface', 'path/to/cell.swc')\n\nprint(\"Surface area:\", LMOutput[\"TotalSum\"])\n```\n\nFor more examples, see [this Jupyter notebook](https://github.com/JustasB/pylmeasure/blob/master/PyLMeasure%20Usage.ipynb).\n\n# Issues\nIf you encounter an issue, first make sure it's not due to L-Measure itself -- this library simply wraps the L-Measure executables. If it is, please contact the [L-Measure team](http://cng.gmu.edu:8080/Lm/). If the issue is with this library, please create an [issue on Github](https://github.com/JustasB/pylmeasure/issues).\n\n# Contributing\n\nTo contribute, please [open an issue](https://github.com/JustasB/pylmeasure/issues) first and discuss your plan for contributing. Then fork this repository and commit [a pull-request](https://help.github.com/en/articles/about-pull-requests) with your changes.\n\n# Acknowledgements\n\nThis wrapper library project was initialy started by [Ajayrama Kumaraswamy](https://github.com/ajkswamy). View [the original source](https://github.com/ajkswamy/python-Lmeasure).\n\n\n",
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