pytim


Namepytim JSON
Version 1.0.1 PyPI version JSON
download
home_pagehttps://github.com/Marcello-Sega/pytim
SummaryPython Tool for Interfacial Molecules Analysis
upload_time2024-08-07 11:49:08
maintainerNone
docs_urlNone
authorMarcello Sega, Balazs Fabian, Gyorgy Hantal, Pal Jedlovszky
requires_pythonNone
licenseGPLv3
keywords molecular simuations analysis
VCS
bugtrack_url
requirements cython numpy scipy gsd MDAnalysis PyWavelets scikit-image sphinx matplotlib pytest dask
Travis-CI No Travis.
coveralls test coverage No coveralls.
            A Python Tool for Interfacial Molecules Analysis
================================================

Pytim is a cross-platform python implementation of several methods
for the detection of fluid interfaces in molecular simulations: it
allows to identify interfacial molecules from the trajectories of
major molecular dynamics simulation packages, and run some analyses
specifically conceived for interfacial molecules, such as intrinsic
profiles.

So far the following methods have been implemented:

* ITIM
* GITIM 
* SASA
* Willard Chandler
* DBSCAN filtering

----

Pytim relies on the MDAnalysis package for reading/writing trajectories,
and work therefore seamlessly for a number of popular trajectory
formats, including:

* GROMACS
* CHARMM/NAMD
* LAMMPS
* AMBER
* DL_Poly



            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/Marcello-Sega/pytim",
    "name": "pytim",
    "maintainer": null,
    "docs_url": null,
    "requires_python": null,
    "maintainer_email": null,
    "keywords": "molecular simuations analysis",
    "author": "Marcello Sega, Balazs Fabian, Gyorgy Hantal, Pal Jedlovszky",
    "author_email": "marcello.sega@univie.ac.at",
    "download_url": "https://files.pythonhosted.org/packages/59/dc/fb1dc61e1466e75639473c93d3429f9f4be06a6b896c11f9f739e4d00990/pytim-1.0.1.tar.gz",
    "platform": null,
    "description": "A Python Tool for Interfacial Molecules Analysis\n================================================\n\nPytim is a cross-platform python implementation of several methods\nfor the detection of fluid interfaces in molecular simulations: it\nallows to identify interfacial molecules from the trajectories of\nmajor molecular dynamics simulation packages, and run some analyses\nspecifically conceived for interfacial molecules, such as intrinsic\nprofiles.\n\nSo far the following methods have been implemented:\n\n* ITIM\n* GITIM \n* SASA\n* Willard Chandler\n* DBSCAN filtering\n\n----\n\nPytim relies on the MDAnalysis package for reading/writing trajectories,\nand work therefore seamlessly for a number of popular trajectory\nformats, including:\n\n* GROMACS\n* CHARMM/NAMD\n* LAMMPS\n* AMBER\n* DL_Poly\n\n\n",
    "bugtrack_url": null,
    "license": "GPLv3",
    "summary": "Python Tool for Interfacial Molecules Analysis",
    "version": "1.0.1",
    "project_urls": {
        "Homepage": "https://github.com/Marcello-Sega/pytim"
    },
    "split_keywords": [
        "molecular",
        "simuations",
        "analysis"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "59dcfb1dc61e1466e75639473c93d3429f9f4be06a6b896c11f9f739e4d00990",
                "md5": "ed5249a0baceb96d9ae2b4fbd364fad6",
                "sha256": "13c0dc93ceae4490494340d4b619df941b97a7fe23131fc2bc0ab8b055bcca20"
            },
            "downloads": -1,
            "filename": "pytim-1.0.1.tar.gz",
            "has_sig": false,
            "md5_digest": "ed5249a0baceb96d9ae2b4fbd364fad6",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 14550356,
            "upload_time": "2024-08-07T11:49:08",
            "upload_time_iso_8601": "2024-08-07T11:49:08.176948Z",
            "url": "https://files.pythonhosted.org/packages/59/dc/fb1dc61e1466e75639473c93d3429f9f4be06a6b896c11f9f739e4d00990/pytim-1.0.1.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-08-07 11:49:08",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "Marcello-Sega",
    "github_project": "pytim",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "circle": true,
    "requirements": [
        {
            "name": "cython",
            "specs": [
                [
                    ">=",
                    "0.24.1"
                ]
            ]
        },
        {
            "name": "numpy",
            "specs": [
                [
                    ">=",
                    "1.26.4"
                ],
                [
                    "<",
                    "2.0.0"
                ]
            ]
        },
        {
            "name": "scipy",
            "specs": [
                [
                    ">=",
                    "1.6.0"
                ]
            ]
        },
        {
            "name": "gsd",
            "specs": [
                [
                    ">",
                    "3.0.0"
                ]
            ]
        },
        {
            "name": "MDAnalysis",
            "specs": [
                [
                    ">=",
                    "2.7.0"
                ]
            ]
        },
        {
            "name": "PyWavelets",
            "specs": [
                [
                    ">=",
                    "0.5.2"
                ]
            ]
        },
        {
            "name": "scikit-image",
            "specs": [
                [
                    ">=",
                    "0.14.2"
                ]
            ]
        },
        {
            "name": "sphinx",
            "specs": [
                [
                    ">=",
                    "1.4.3"
                ]
            ]
        },
        {
            "name": "matplotlib",
            "specs": []
        },
        {
            "name": "pytest",
            "specs": []
        },
        {
            "name": "dask",
            "specs": [
                [
                    ">=",
                    "1.1.1"
                ]
            ]
        }
    ],
    "lcname": "pytim"
}
        
Elapsed time: 8.60977s