query-phenomizer

Name	query-phenomizer JSON
Version	1.2.1 JSON
	download
home_page	https://www.github.com/moonso/query_phenomizer
Summary	Tool for query and parsing the phenomizer tool
upload_time	2024-01-09 13:23:40
maintainer
docs_url	None
author	Måns Magnusson
requires_python
license	Modified BSD
keywords	hpo development phenomizer
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI
coveralls test coverage	No coveralls.

            [![Build Status](https://travis-ci.org/moonso/query_phenomizer.svg)](https://travis-ci.org/moonso/query_phenomizer)
# query_phenomizer #

A small module for querying the [phenomizer tool](http://compbio.charite.de/phenomizer/) with HPO-terms.

# INFO!!! #

From 16/2-16 phenomizer demands a password and username when using the service in this way.
Request login credentials from sebastian.koehler@charite.de

## Installation ##

    pip install query_phenomizer

or
```
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
```
##Usage##

    query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt

User can check if hpo terms exist by using the flag ```-c/--check_terms```.

    query_phenomizer HP:0001623 HP:02345555 --check_terms -v

Prints that HP:02345555 does not exist.

For more info run

    query_phenomizer --help

            

Raw data

            {
    "_id": null,
    "home_page": "https://www.github.com/moonso/query_phenomizer",
    "name": "query-phenomizer",
    "maintainer": "",
    "docs_url": null,
    "requires_python": "",
    "maintainer_email": "",
    "keywords": "hpo development phenomizer",
    "author": "M\u00e5ns Magnusson",
    "author_email": "mans.magnusson@scilifelab.se",
    "download_url": "https://files.pythonhosted.org/packages/02/21/0e62f38dcf337727a4d3b7d18dc55b090296f43ac95a070c2dbe3e5ef24f/query_phenomizer-1.2.1.tar.gz",
    "platform": null,
    "description": "[![Build Status](https://travis-ci.org/moonso/query_phenomizer.svg)](https://travis-ci.org/moonso/query_phenomizer)\n# query_phenomizer #\n\nA small module for querying the [phenomizer tool](http://compbio.charite.de/phenomizer/) with HPO-terms.\n\n# INFO!!! #\n\nFrom 16/2-16 phenomizer demands a password and username when using the service in this way.\nRequest login credentials from sebastian.koehler@charite.de\n\n## Installation ##\n\n    pip install query_phenomizer\n\nor\n```\ngit clone https://github.com/moonso/query_phenomizer.git\ncd query_phenomizer\npip install --editable .\n```\n##Usage##\n\n    query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt\n\nUser can check if hpo terms exist by using the flag ```-c/--check_terms```.\n\n    query_phenomizer HP:0001623 HP:02345555 --check_terms -v\n\nPrints that HP:02345555 does not exist.\n\nFor more info run\n\n    query_phenomizer --help\n",
    "bugtrack_url": null,
    "license": "Modified BSD",
    "summary": "Tool for query and parsing the phenomizer tool",
    "version": "1.2.1",
    "project_urls": {
        "Homepage": "https://www.github.com/moonso/query_phenomizer"
    },
    "split_keywords": [
        "hpo",
        "development",
        "phenomizer"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "d679408132ee652fa18b47d2b3252e0980d5b231b3397fc7397a40dfec2b91a2",
                "md5": "fe447d5dfa436f60d80827e6b107967f",
                "sha256": "403d66f71c1cb345f61d52865637a91ac1348b7929422c0feb1fff32f163e11d"
            },
            "downloads": -1,
            "filename": "query_phenomizer-1.2.1-py2.py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "fe447d5dfa436f60d80827e6b107967f",
            "packagetype": "bdist_wheel",
            "python_version": "py2.py3",
            "requires_python": null,
            "size": 7061,
            "upload_time": "2024-01-09T13:23:38",
            "upload_time_iso_8601": "2024-01-09T13:23:38.507268Z",
            "url": "https://files.pythonhosted.org/packages/d6/79/408132ee652fa18b47d2b3252e0980d5b231b3397fc7397a40dfec2b91a2/query_phenomizer-1.2.1-py2.py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "02210e62f38dcf337727a4d3b7d18dc55b090296f43ac95a070c2dbe3e5ef24f",
                "md5": "d8eadf494af580835e365286042ee5fd",
                "sha256": "fe673970e435bf49fd4d7f14283d8f4e11546fca597a39abf8ca87158da9ca20"
            },
            "downloads": -1,
            "filename": "query_phenomizer-1.2.1.tar.gz",
            "has_sig": false,
            "md5_digest": "d8eadf494af580835e365286042ee5fd",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 7325,
            "upload_time": "2024-01-09T13:23:40",
            "upload_time_iso_8601": "2024-01-09T13:23:40.272694Z",
            "url": "https://files.pythonhosted.org/packages/02/21/0e62f38dcf337727a4d3b7d18dc55b090296f43ac95a070c2dbe3e5ef24f/query_phenomizer-1.2.1.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-01-09 13:23:40",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "moonso",
    "github_project": "query_phenomizer",
    "travis_ci": true,
    "coveralls": false,
    "github_actions": false,
    "requirements": [],
    "lcname": "query-phenomizer"
}