======================
Resolwe Bioinformatics
======================
|build| |coverage| |docs| |pypi_version| |pypi_pyversions|
.. |build| image:: https://public.ci.genialis.io/buildStatus/icon/resolwe-bio/master
:target: https://ci.genialis.io/blue/organizations/jenkins/resolwe-bio/activity
:alt: Build Status
.. |coverage| image:: https://img.shields.io/codecov/c/github/genialis/resolwe-bio/master.svg
:target: http://codecov.io/github/genialis/resolwe-bio?branch=master
:alt: Coverage Status
.. |docs| image:: https://readthedocs.org/projects/resolwe-bio/badge/?version=latest
:target: http://resolwe-bio.readthedocs.io/
:alt: Documentation Status
.. |pypi_version| image:: https://img.shields.io/pypi/v/resolwe-bio.svg
:target: https://pypi.python.org/pypi/resolwe-bio
:alt: Version on PyPI
.. |pypi_pyversions| image:: https://img.shields.io/pypi/pyversions/resolwe-bio.svg
:target: https://pypi.python.org/pypi/resolwe-bio
:alt: Supported Python versions
.. |pypi_downloads| image:: https://img.shields.io/pypi/dm/resolwe-bio.svg
:target: https://pypi.python.org/pypi/resolwe-bio
:alt: Number of downloads from PyPI
Bioinformatics pipelines for the Resolwe_ dataflow package for `Django
framework`_.
.. _Resolwe: https://github.com/genialis/resolwe
.. _Django framework: https://www.djangoproject.com/
Docs & Help
===========
Read about getting started and how to write `processes` in the documentation_.
To chat with developers or ask for help, join us on Slack_.
.. _documentation: http://resolwe-bio.readthedocs.io/
.. _Slack: http://resolwe.slack.com/
Install
=======
Prerequisites
-------------
Make sure you have Python_ 3.6 installed on your system. If you don't have it
yet, follow `these instructions
<https://docs.python.org/3/using/index.html>`__.
Resolwe requires PostgreSQL_ (9.4+). Many Linux distributions already include
the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+)
and you can simply install it via distribution's package manager.
Otherwise, follow `these instructions
<https://wiki.postgresql.org/wiki/Detailed_installation_guides>`__.
Additionally, installing some (indirect) dependencies from PyPI_ will require
having a C compiler (e.g. GCC_) as well as Python development files installed
on the system.
Note
^^^^
The preferred way to install the C compiler and Python development files is to
use your distribution's packages, if they exist. For example, on a
Fedora/RHEL-based system, that would mean installing ``gcc`` and
``python3-devel`` packages.
.. _Python: https://www.python.org/
.. _PostgreSQL: http://www.postgresql.org/
.. _PyPi: https://pypi.python.org/
.. _GCC: https://gcc.gnu.org/
Using PyPI_
-----------
.. code::
pip install resolwe-bio
To install a pre-release, use:
.. code::
pip install --pre resolwe-bio
Using source on GitHub_
-----------------------
.. code::
pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz
where ``<git-tree-ish>`` can represent any commit SHA, branch name, tag name,
etc. in `Resolwe Bioinformatics' GitHub repository`_. For example, to install
the latest Resolwe Bioinformatics from the ``master`` branch, use:
.. code::
pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz
.. _`Resolwe Bioinformatics' GitHub repository`: https://github.com/genialis/resolwe-bio/
.. _GitHub: `Resolwe Bioinformatics' GitHub repository`_
Contribute
==========
We welcome new contributors. To learn more, read Contributing_ section of the
documentation.
.. _Contributing: http://resolwe-bio.readthedocs.io/en/latest/contributing.html
Raw data
{
"_id": null,
"home_page": "https://github.com/genialis/resolwe-bio",
"name": "resolwe-bio",
"maintainer": null,
"docs_url": null,
"requires_python": "<3.13,>=3.11",
"maintainer_email": null,
"keywords": "bioinformatics resolwe bio pipelines dataflow django",
"author": "Genialis, Inc.",
"author_email": "dev-team@genialis.com",
"download_url": "https://files.pythonhosted.org/packages/7d/71/70a271b10c16d10bd17a636ab2393152268356584d12f0d1038be8213d31/resolwe-bio-59.2.0.tar.gz",
"platform": null,
"description": "======================\nResolwe Bioinformatics\n======================\n\n|build| |coverage| |docs| |pypi_version| |pypi_pyversions|\n\n.. |build| image:: https://public.ci.genialis.io/buildStatus/icon/resolwe-bio/master\n :target: https://ci.genialis.io/blue/organizations/jenkins/resolwe-bio/activity\n :alt: Build Status\n\n.. |coverage| image:: https://img.shields.io/codecov/c/github/genialis/resolwe-bio/master.svg\n :target: http://codecov.io/github/genialis/resolwe-bio?branch=master\n :alt: Coverage Status\n\n.. |docs| image:: https://readthedocs.org/projects/resolwe-bio/badge/?version=latest\n :target: http://resolwe-bio.readthedocs.io/\n :alt: Documentation Status\n\n.. |pypi_version| image:: https://img.shields.io/pypi/v/resolwe-bio.svg\n :target: https://pypi.python.org/pypi/resolwe-bio\n :alt: Version on PyPI\n\n.. |pypi_pyversions| image:: https://img.shields.io/pypi/pyversions/resolwe-bio.svg\n :target: https://pypi.python.org/pypi/resolwe-bio\n :alt: Supported Python versions\n\n.. |pypi_downloads| image:: https://img.shields.io/pypi/dm/resolwe-bio.svg\n :target: https://pypi.python.org/pypi/resolwe-bio\n :alt: Number of downloads from PyPI\n\nBioinformatics pipelines for the Resolwe_ dataflow package for `Django\nframework`_.\n\n.. _Resolwe: https://github.com/genialis/resolwe\n.. _Django framework: https://www.djangoproject.com/\n\n\nDocs & Help\n===========\n\nRead about getting started and how to write `processes` in the documentation_.\n\nTo chat with developers or ask for help, join us on Slack_.\n\n.. _documentation: http://resolwe-bio.readthedocs.io/\n.. _Slack: http://resolwe.slack.com/\n\n\nInstall\n=======\n\nPrerequisites\n-------------\n\nMake sure you have Python_ 3.6 installed on your system. If you don't have it\nyet, follow `these instructions\n<https://docs.python.org/3/using/index.html>`__.\n\nResolwe requires PostgreSQL_ (9.4+). Many Linux distributions already include\nthe required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+)\nand you can simply install it via distribution's package manager.\nOtherwise, follow `these instructions\n<https://wiki.postgresql.org/wiki/Detailed_installation_guides>`__.\n\nAdditionally, installing some (indirect) dependencies from PyPI_ will require\nhaving a C compiler (e.g. GCC_) as well as Python development files installed\non the system.\n\nNote\n^^^^\n\nThe preferred way to install the C compiler and Python development files is to\nuse your distribution's packages, if they exist. For example, on a\nFedora/RHEL-based system, that would mean installing ``gcc`` and\n``python3-devel`` packages.\n\n.. _Python: https://www.python.org/\n.. _PostgreSQL: http://www.postgresql.org/\n.. _PyPi: https://pypi.python.org/\n.. _GCC: https://gcc.gnu.org/\n\nUsing PyPI_\n-----------\n\n.. code::\n\n pip install resolwe-bio\n\nTo install a pre-release, use:\n\n.. code::\n\n pip install --pre resolwe-bio\n\nUsing source on GitHub_\n-----------------------\n\n.. code::\n\n pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz\n\nwhere ``<git-tree-ish>`` can represent any commit SHA, branch name, tag name,\netc. in `Resolwe Bioinformatics' GitHub repository`_. For example, to install\nthe latest Resolwe Bioinformatics from the ``master`` branch, use:\n\n.. code::\n\n pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz\n\n.. _`Resolwe Bioinformatics' GitHub repository`: https://github.com/genialis/resolwe-bio/\n.. _GitHub: `Resolwe Bioinformatics' GitHub repository`_\n\n\nContribute\n==========\n\nWe welcome new contributors. To learn more, read Contributing_ section of the\ndocumentation.\n\n.. _Contributing: http://resolwe-bio.readthedocs.io/en/latest/contributing.html\n",
"bugtrack_url": null,
"license": "Apache License (2.0)",
"summary": "Bioinformatics pipelines for the Resolwe platform",
"version": "59.2.0",
"project_urls": {
"Homepage": "https://github.com/genialis/resolwe-bio"
},
"split_keywords": [
"bioinformatics",
"resolwe",
"bio",
"pipelines",
"dataflow",
"django"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "e2ffa2ae7b93160d2713dfa079ed8b6e866fd05af018235c956e3892b59a5ad6",
"md5": "1dfcaa94d2228d837861f6f266aaade8",
"sha256": "db3d845c43d802792d5c44b27d103feafc2f1feffcf4130feb012241fad1de1a"
},
"downloads": -1,
"filename": "resolwe_bio-59.2.0-py3-none-any.whl",
"has_sig": false,
"md5_digest": "1dfcaa94d2228d837861f6f266aaade8",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": "<3.13,>=3.11",
"size": 544363,
"upload_time": "2024-10-14T14:33:25",
"upload_time_iso_8601": "2024-10-14T14:33:25.167585Z",
"url": "https://files.pythonhosted.org/packages/e2/ff/a2ae7b93160d2713dfa079ed8b6e866fd05af018235c956e3892b59a5ad6/resolwe_bio-59.2.0-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "7d7170a271b10c16d10bd17a636ab2393152268356584d12f0d1038be8213d31",
"md5": "5da0ed025a9863380ffbba027fb73440",
"sha256": "d5ba7f63a33c21d83316d1b36d7a2ed5ffe7ff9d9e75afc6572910436310fd05"
},
"downloads": -1,
"filename": "resolwe-bio-59.2.0.tar.gz",
"has_sig": false,
"md5_digest": "5da0ed025a9863380ffbba027fb73440",
"packagetype": "sdist",
"python_version": "source",
"requires_python": "<3.13,>=3.11",
"size": 22477658,
"upload_time": "2024-10-14T14:33:28",
"upload_time_iso_8601": "2024-10-14T14:33:28.789231Z",
"url": "https://files.pythonhosted.org/packages/7d/71/70a271b10c16d10bd17a636ab2393152268356584d12f0d1038be8213d31/resolwe-bio-59.2.0.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-10-14 14:33:28",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "genialis",
"github_project": "resolwe-bio",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"tox": true,
"lcname": "resolwe-bio"
}
JSON
