rhotermpredict

Name	rhotermpredict JSON
Version	3.4 JSON
	download
home_page	https://github.com/barricklab/RhoTermPredict
Summary	RhoTermPredict (Barrick Lab Fork)
upload_time	2024-08-08 19:01:50
maintainer	None
docs_url	None
author	Cameron Roots
requires_python	None
license	None
keywords
VCS
bugtrack_url
requirements	numpy biopython
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # RhoTermPredict

RhoTermPredict algorithm in python language

RhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).

INPUT: genome sequences file in fasta format

OUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/barricklab/RhoTermPredict",
    "name": "rhotermpredict",
    "maintainer": null,
    "docs_url": null,
    "requires_python": null,
    "maintainer_email": null,
    "keywords": null,
    "author": "Cameron Roots",
    "author_email": "croots@utexas.edu",
    "download_url": "https://files.pythonhosted.org/packages/97/d1/9c4ef5c2c4ef4835e05afa6d57fb2b46687cb774f687251cb32f1bd06129/rhotermpredict-3.4.tar.gz",
    "platform": null,
    "description": "# RhoTermPredict\n\nRhoTermPredict algorithm in python language\n\nRhoTermPredict is an algorithm for the prediction of Rho-dependent transcription terminators in bacterial genomes. It searchs for a putative RUT site followed by a putative pause site for RNA polymerase (hairpin structure and/or pause-consensus element).\n\nINPUT: genome sequences file in fasta format\n\nOUTPUT: a csv file containing the coordinates of predicted Rho-dependent terminators and a txt file cointaining some informations about predictions\n",
    "bugtrack_url": null,
    "license": null,
    "summary": "RhoTermPredict (Barrick Lab Fork)",
    "version": "3.4",
    "project_urls": {
        "Bug Tracker": "https://github.com/barricklab/RhoTermPredict/issues",
        "Homepage": "https://github.com/barricklab/RhoTermPredict",
        "Source Code": "https://github.com/barricklab/RhoTermPredict"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "6b90b3cfb67324d334b4484ea7cd221fbbdefdd67ee64adb00514f16059bd39d",
                "md5": "a14d01ef9326ff515f65fe8b4e7b4d37",
                "sha256": "9ff873959e15649a032434973885cc84d3329ffa1d10bb2eb720b1c6593ca8eb"
            },
            "downloads": -1,
            "filename": "rhotermpredict-3.4-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "a14d01ef9326ff515f65fe8b4e7b4d37",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": null,
            "size": 18879,
            "upload_time": "2024-08-08T19:01:48",
            "upload_time_iso_8601": "2024-08-08T19:01:48.285689Z",
            "url": "https://files.pythonhosted.org/packages/6b/90/b3cfb67324d334b4484ea7cd221fbbdefdd67ee64adb00514f16059bd39d/rhotermpredict-3.4-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "97d19c4ef5c2c4ef4835e05afa6d57fb2b46687cb774f687251cb32f1bd06129",
                "md5": "ef17c7fe8c17276e79b87c3e2f58f518",
                "sha256": "15a45581595e647e0f9dca31df45a5820144d2d5a5097bb61102bc57134acc36"
            },
            "downloads": -1,
            "filename": "rhotermpredict-3.4.tar.gz",
            "has_sig": false,
            "md5_digest": "ef17c7fe8c17276e79b87c3e2f58f518",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 18890,
            "upload_time": "2024-08-08T19:01:50",
            "upload_time_iso_8601": "2024-08-08T19:01:50.438430Z",
            "url": "https://files.pythonhosted.org/packages/97/d1/9c4ef5c2c4ef4835e05afa6d57fb2b46687cb774f687251cb32f1bd06129/rhotermpredict-3.4.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-08-08 19:01:50",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "barricklab",
    "github_project": "RhoTermPredict",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "requirements": [
        {
            "name": "numpy",
            "specs": [
                [
                    ">=",
                    "1.15.4"
                ]
            ]
        },
        {
            "name": "biopython",
            "specs": [
                [
                    ">=",
                    "0.1.0"
                ]
            ]
        }
    ],
    "lcname": "rhotermpredict"
}