# Ribotools
**Ribotools**, an _add-on_ to [Rp-Bp](http://rp-bp.readthedocs.io/en/latest/), is a toolbox for the analysis of matched ribosome profiling (Ribo-seq) and RNA sequencing (RNA-seq) data.
**Ribotools** can be used to generate count tables, starting from raw, trimmed reads, or existing alignments, taking into consideration Ribo-seq periodicity estimates and RNA-seq fragment length. **Ribotools** include scripts to perform translation efficiency (TE) analysis, accommodating for sample-to-sample variance, complex experimental designs, or confounding factors, and classifies features into different regulatory layers.
<p align="center">
<a href="https://ribotools.readthedocs.io/en/latest"><img alt="Ribotools" src="https://github.com/eboileau/ribotools/raw/master/docs/source/_static/ribotools-logo-light.png"></a>
</p>
<p align="center">
<a href="https://pypi.org/project/ribotools/"><img alt="PyPI" src="https://img.shields.io/pypi/v/ribotools"></a>
<a href='https://ribotools.readthedocs.io/en/latest/?badge=latest'>
<img src='https://readthedocs.org/projects/ribotools/badge/?version=latest' alt='Documentation Status' />
</a>
</p>
---
## Documentation
Consult the [user guide](https://ribotools.readthedocs.io/en/latest) for instructions on how to install the package and detailed usage instructions.
## How to report issues
For bugs, issues, or feature requests, use the [bug tracker](https://github.com/eboileau/ribotools/issues). Follow the instructions and guidelines given in the templates.
## License
The MIT License (MIT). Copyright (c) 2019 Etienne Boileau.
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"description": "# Ribotools\n\n**Ribotools**, an _add-on_ to [Rp-Bp](http://rp-bp.readthedocs.io/en/latest/), is a toolbox for the analysis of matched ribosome profiling (Ribo-seq) and RNA sequencing (RNA-seq) data.\n\n**Ribotools** can be used to generate count tables, starting from raw, trimmed reads, or existing alignments, taking into consideration Ribo-seq periodicity estimates and RNA-seq fragment length. **Ribotools** include scripts to perform translation efficiency (TE) analysis, accommodating for sample-to-sample variance, complex experimental designs, or confounding factors, and classifies features into different regulatory layers.\n\n<p align=\"center\">\n <a href=\"https://ribotools.readthedocs.io/en/latest\"><img alt=\"Ribotools\" src=\"https://github.com/eboileau/ribotools/raw/master/docs/source/_static/ribotools-logo-light.png\"></a>\n</p>\n\n<p align=\"center\">\n<a href=\"https://pypi.org/project/ribotools/\"><img alt=\"PyPI\" src=\"https://img.shields.io/pypi/v/ribotools\"></a>\n<a href='https://ribotools.readthedocs.io/en/latest/?badge=latest'>\n <img src='https://readthedocs.org/projects/ribotools/badge/?version=latest' alt='Documentation Status' />\n</a>\n</p>\n\n---\n\n## Documentation\n\nConsult the [user guide](https://ribotools.readthedocs.io/en/latest) for instructions on how to install the package and detailed usage instructions.\n\n## How to report issues\n\nFor bugs, issues, or feature requests, use the [bug tracker](https://github.com/eboileau/ribotools/issues). Follow the instructions and guidelines given in the templates.\n\n## License\n\nThe MIT License (MIT). Copyright (c) 2019 Etienne Boileau.\n",
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