scikit-surgeryimage
====================
.. image:: https://github.com/SciKit-Surgery/scikit-surgeryimage/raw/master/weiss_logo.png
:height: 128px
:width: 128px
:target: https://github.com/SciKit-Surgery/scikit-surgeryimage
:alt: Logo
|
.. image:: https://github.com/SciKit-Surgery/scikit-surgeryimage/workflows/.github/workflows/ci.yml/badge.svg
:target: https://github.com/SciKit-Surgery/scikit-surgeryimage/actions
:alt: GitHub Actions CI status
.. image:: https://coveralls.io/repos/github/SciKit-Surgery/scikit-surgeryimage/badge.svg?branch=master&service=github
:target: https://coveralls.io/github/SciKit-Surgery/scikit-surgeryimage?branch=master
:alt: Test coverage
.. image:: https://readthedocs.org/projects/scikit-surgeryimage/badge/?version=latest
:target: http://scikit-surgeryimage.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status
.. image:: https://img.shields.io/badge/Cite-SciKit--Surgery-informational
:target: https://doi.org/10.1007/s11548-020-02180-5
:alt: The SciKit-Surgery paper
.. image:: https://img.shields.io/twitter/url?style=social&url=http%3A%2F%2Fscikit-surgery.org
:target: https://twitter.com/intent/tweet?screen_name=scikit_surgery&ref_src=twsrc%5Etfw
:alt: Get in touch via twitter
.. image:: https://img.shields.io/twitter/follow/scikit_surgery?style=social
:target: https://twitter.com/scikit_surgery?ref_src=twsrc%5Etfw
:alt: Follow scikit_surgery on twitter
scikit-surgeryimage is a python only project to implement image processing algorithms
that are useful for image-guided surgery.
scikit-surgeryimage was developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_ in `University College London (UCL)`_.
.. features-start
Features
--------
requirements.txt specifies a dependency on opencv-contrib-python-headless, so you can use any OpenCV python therein.
In addition, this project provides:
* `Convenience classes <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#data-acquisition>`_ for video read and write.
* `Utilities <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#calibration-tools>`_ to detect the number of cameras and prepare text for overlay on video.
* A `PointDetector <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#utilities>`_ interface for video camera calibration and implementations such as OpenCV chessboard, ArUco, ChArUco and combinations.
* Generate `ChArUco <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#sksurgeryimage.calibration.charuco.make_charuco_board>`_ patterns
* `Interlacing and deinterlacing <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#video-interlacing-functions>`_.
* Convenience wrappers for `erosion and dilation <https://scikit-surgeryimage.readthedocs.io/en/latest/module_ref.html#module-sksurgeryimage.processing.morphological_operators>`_.
.. features-end
Installing
~~~~~~~~~~
You can pip install directly from the repository as follows:
::
pip install scikit-surgeryimage
Developing
^^^^^^^^^^
You can clone the repository using the following command:
::
git clone https://github.com/SciKit-Surgery/scikit-surgeryimage
Running the tests
^^^^^^^^^^^^^^^^^
You can run the unit tests by installing and running tox:
::
pip install tox
tox
Encountering Problems?
^^^^^^^^^^^^^^^^^^^^^^
Please check list of `common issues`_.
Contributing
^^^^^^^^^^^^
Please see the `contributing guidelines`_.
Useful links
^^^^^^^^^^^^
* `Source code repository`_
* `Documentation`_
Licensing and copyright
-----------------------
Copyright 2018 University College London.
scikit-surgeryimage is released under the BSD-3 license. Please see the `license file`_ for details.
Acknowledgements
----------------
Supported by `Wellcome`_ and `EPSRC`_.
.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://github.com/SciKit-Surgery/scikit-surgeryimage
.. _`Documentation`: https://scikit-surgeryimage.readthedocs.io
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://github.com/SciKit-Surgery/scikit-surgeryimage/blob/master/CONTRIBUTING.rst
.. _`license file`: https://github.com/SciKit-Surgery/scikit-surgeryimage/blob/master/LICENSE
.. _`common issues`: https://github.com/SciKit-Surgery/scikit-surgery/wikis/Common-Issues
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