topaz-em

Name	topaz-em JSON
Version	0.3.6 JSON
	download
home_page	https://github.com/tbepler/topaz
Summary	Particle picking with positive-unlabeled CNNs
upload_time	2025-01-07 20:09:47
maintainer	None
docs_url	None
author	Tristan Bepler
requires_python	<=3.12,>=3.8
license	GPLv3
keywords	cryoem particle-picking cnn positive-unlabeled denoise topaz
VCS
bugtrack_url
requirements	torch torchvision tqdm h5py numpy pandas scikit-learn scipy pillow future
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            Particle picking software for single particle cryo-electron microscopy using convolutional neural networks and positive-unlabeled learning. Includes methods for micrograph denoising.

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/tbepler/topaz",
    "name": "topaz-em",
    "maintainer": null,
    "docs_url": null,
    "requires_python": "<=3.12,>=3.8",
    "maintainer_email": null,
    "keywords": "cryoEM particle-picking CNN positive-unlabeled denoise topaz",
    "author": "Tristan Bepler",
    "author_email": "tbepler@mit.edu",
    "download_url": "https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz",
    "platform": null,
    "description": "Particle picking software for single particle cryo-electron microscopy using convolutional neural networks and positive-unlabeled learning. Includes methods for micrograph denoising.\n",
    "bugtrack_url": null,
    "license": "GPLv3",
    "summary": "Particle picking with positive-unlabeled CNNs",
    "version": "0.3.6",
    "project_urls": {
        "Homepage": "https://github.com/tbepler/topaz"
    },
    "split_keywords": [
        "cryoem",
        "particle-picking",
        "cnn",
        "positive-unlabeled",
        "denoise",
        "topaz"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "d65df8715405f1fc39b0cddaf9434c8f609fcd296e49d7e0a637a88f69e56444",
                "md5": "53baa7e33432bdc19cf15248f27d0287",
                "sha256": "e57f8a8b22ee5fca90c8c087c6b6a2e46bb256f7e93268a40f7d1f148aae6c4e"
            },
            "downloads": -1,
            "filename": "topaz_em-0.3.6-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "53baa7e33432bdc19cf15248f27d0287",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": "<=3.12,>=3.8",
            "size": 48203310,
            "upload_time": "2025-01-07T20:09:39",
            "upload_time_iso_8601": "2025-01-07T20:09:39.875304Z",
            "url": "https://files.pythonhosted.org/packages/d6/5d/f8715405f1fc39b0cddaf9434c8f609fcd296e49d7e0a637a88f69e56444/topaz_em-0.3.6-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "cd29268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af",
                "md5": "87e0816739d7f1fed980752e0d464bef",
                "sha256": "77df37b2d2fe2e94c24106430065dff8a061310d7d08cab5f7cc95551d72a9a5"
            },
            "downloads": -1,
            "filename": "topaz_em-0.3.6.tar.gz",
            "has_sig": false,
            "md5_digest": "87e0816739d7f1fed980752e0d464bef",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": "<=3.12,>=3.8",
            "size": 48187761,
            "upload_time": "2025-01-07T20:09:47",
            "upload_time_iso_8601": "2025-01-07T20:09:47.949913Z",
            "url": "https://files.pythonhosted.org/packages/cd/29/268eb9a391c4fa7e151956f99e8d309d89fad9381fed9d2799d7e02737af/topaz_em-0.3.6.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2025-01-07 20:09:47",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "tbepler",
    "github_project": "topaz",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "requirements": [
        {
            "name": "torch",
            "specs": [
                [
                    ">=",
                    "1.0.0"
                ],
                [
                    "<=",
                    "2.3.1"
                ]
            ]
        },
        {
            "name": "torchvision",
            "specs": []
        },
        {
            "name": "tqdm",
            "specs": [
                [
                    ">=",
                    "4.65.0"
                ]
            ]
        },
        {
            "name": "h5py",
            "specs": [
                [
                    ">=",
                    "3.7.0"
                ]
            ]
        },
        {
            "name": "numpy",
            "specs": [
                [
                    ">=",
                    "1.11"
                ]
            ]
        },
        {
            "name": "pandas",
            "specs": [
                [
                    ">=",
                    "0.20.3"
                ]
            ]
        },
        {
            "name": "scikit-learn",
            "specs": [
                [
                    ">=",
                    "0.19.0"
                ]
            ]
        },
        {
            "name": "scipy",
            "specs": [
                [
                    ">=",
                    "0.17.0"
                ]
            ]
        },
        {
            "name": "pillow",
            "specs": [
                [
                    ">=",
                    "6.2.0"
                ]
            ]
        },
        {
            "name": "future",
            "specs": []
        }
    ],
    "lcname": "topaz-em"
}