yappgen


Nameyappgen JSON
Version 0.4.1 PyPI version JSON
download
home_pageNone
SummaryYet Another Phasing Program
upload_time2025-02-04 15:09:07
maintainerNone
docs_urlNone
authorNone
requires_python>3.7
licenseLGPL v2.1
keywords
VCS
bugtrack_url
requirements asciitree cached-property click coloredlogs cyvcf2 fasteners fastphase h5py humanfriendly numba numcodecs numpy scipy six zarr
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # yapp : Yet Another Phasing Program

yapp is a program that includes a set of utilities to work on high
density genetic data in pedigrees. It is similar to other existing
softwares such as LINKPHASE, FIMPUTE, AlphaPhase ... . I
developed it for my own research to have a tool that is opensource and
that I can tweak to my own needs.

If you find it useful for you, drop me a note (*e.g.* on twitter
@BertrandServin). If you want to contribute ideas or code, you are
welcome if you know python :)

yapp and its utilities implement some models and methods that have been
invented by other people. If you use yapp it is important that you
acknowledge their work by citing the appropriate
references. These will depend on the way you use the software, see the
[documentation](https://yapp.readthedocs.io).

            

Raw data

            {
    "_id": null,
    "home_page": null,
    "name": "yappgen",
    "maintainer": null,
    "docs_url": null,
    "requires_python": ">3.7",
    "maintainer_email": null,
    "keywords": null,
    "author": null,
    "author_email": null,
    "download_url": "https://files.pythonhosted.org/packages/cc/cb/6875ef6b4ecf372f5097316d7d802690213fe24d5c60873c82f1642c7b24/yappgen-0.4.1.tar.gz",
    "platform": null,
    "description": "# yapp : Yet Another Phasing Program\n\nyapp is a program that includes a set of utilities to work on high\ndensity genetic data in pedigrees. It is similar to other existing\nsoftwares such as LINKPHASE, FIMPUTE, AlphaPhase ... . I\ndeveloped it for my own research to have a tool that is opensource and\nthat I can tweak to my own needs.\n\nIf you find it useful for you, drop me a note (*e.g.* on twitter\n@BertrandServin). If you want to contribute ideas or code, you are\nwelcome if you know python :)\n\nyapp and its utilities implement some models and methods that have been\ninvented by other people. If you use yapp it is important that you\nacknowledge their work by citing the appropriate\nreferences. These will depend on the way you use the software, see the\n[documentation](https://yapp.readthedocs.io).\n",
    "bugtrack_url": null,
    "license": "LGPL v2.1",
    "summary": "Yet Another Phasing Program",
    "version": "0.4.1",
    "project_urls": {
        "Documentation": "https://yapp.readthedocs.io",
        "Repository": "https://github.com/BertrandServin/yapp"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "c95aff44a45ce9282751d3ee3e4c748ee73f8e15e80f4edeed090cd613c26d12",
                "md5": "c631f37c68c04925b0e1943d6ad11859",
                "sha256": "31784966eb52afd77d53394c53fc7e0c466db633bcdd8459e76ea77b85ba29c5"
            },
            "downloads": -1,
            "filename": "yappgen-0.4.1-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "c631f37c68c04925b0e1943d6ad11859",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": ">3.7",
            "size": 51390,
            "upload_time": "2025-02-04T15:09:06",
            "upload_time_iso_8601": "2025-02-04T15:09:06.382215Z",
            "url": "https://files.pythonhosted.org/packages/c9/5a/ff44a45ce9282751d3ee3e4c748ee73f8e15e80f4edeed090cd613c26d12/yappgen-0.4.1-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "cccb6875ef6b4ecf372f5097316d7d802690213fe24d5c60873c82f1642c7b24",
                "md5": "9e9a85307143af256a05e6d4c0ef48dc",
                "sha256": "f1c626aa7e9e3fafca26fb33a0b59e7f0de6923a07033e1ff43abff1c42b943f"
            },
            "downloads": -1,
            "filename": "yappgen-0.4.1.tar.gz",
            "has_sig": false,
            "md5_digest": "9e9a85307143af256a05e6d4c0ef48dc",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">3.7",
            "size": 47210,
            "upload_time": "2025-02-04T15:09:07",
            "upload_time_iso_8601": "2025-02-04T15:09:07.721181Z",
            "url": "https://files.pythonhosted.org/packages/cc/cb/6875ef6b4ecf372f5097316d7d802690213fe24d5c60873c82f1642c7b24/yappgen-0.4.1.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2025-02-04 15:09:07",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "BertrandServin",
    "github_project": "yapp",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": false,
    "requirements": [
        {
            "name": "asciitree",
            "specs": [
                [
                    "==",
                    "0.3.3"
                ]
            ]
        },
        {
            "name": "cached-property",
            "specs": [
                [
                    "==",
                    "1.5.2"
                ]
            ]
        },
        {
            "name": "click",
            "specs": [
                [
                    "==",
                    "7.1.2"
                ]
            ]
        },
        {
            "name": "coloredlogs",
            "specs": [
                [
                    "==",
                    "15.0"
                ]
            ]
        },
        {
            "name": "cyvcf2",
            "specs": [
                [
                    "==",
                    "0.30.4"
                ]
            ]
        },
        {
            "name": "fasteners",
            "specs": [
                [
                    "==",
                    "0.16"
                ]
            ]
        },
        {
            "name": "fastphase",
            "specs": [
                [
                    ">=",
                    "1.2"
                ]
            ]
        },
        {
            "name": "h5py",
            "specs": [
                [
                    "==",
                    "3.2.1"
                ]
            ]
        },
        {
            "name": "humanfriendly",
            "specs": [
                [
                    "==",
                    "9.1"
                ]
            ]
        },
        {
            "name": "numba",
            "specs": [
                [
                    "==",
                    "0.53.1"
                ]
            ]
        },
        {
            "name": "numcodecs",
            "specs": [
                [
                    "==",
                    "0.7.3"
                ]
            ]
        },
        {
            "name": "numpy",
            "specs": [
                [
                    "==",
                    "1.20.2"
                ]
            ]
        },
        {
            "name": "scipy",
            "specs": [
                [
                    "==",
                    "1.6.2"
                ]
            ]
        },
        {
            "name": "six",
            "specs": [
                [
                    "==",
                    "1.15.0"
                ]
            ]
        },
        {
            "name": "zarr",
            "specs": [
                [
                    "==",
                    "2.7.0"
                ]
            ]
        }
    ],
    "lcname": "yappgen"
}
        
Elapsed time: 0.43389s