| Name | Version | Summary | date |
| silvio |
0.2.13 |
silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked microbial models. |
2025-09-19 11:24:10 |
| pairwiseANIviz |
1.2 |
Pairwise ANI (Average Nucleotide Identity) visualization tool |
2025-09-04 04:43:38 |
| symclatron |
0.6.4 |
symclatron: symbiont classifier |
2025-08-25 22:07:28 |
| staphscope-typing-tool |
0.1.0 |
Staphscope Typing Tool — MLST + spa + SCCmec typing for Staphylococcus aureus |
2025-08-19 12:54:26 |
| MacSyLib |
1.0.2 |
MacSyLib: Python library that help to detect of macromolecular, systems genetic pathways… in prokaryotes protein datasets using systems modelling and similarity search. |
2025-08-18 14:34:03 |
| parathaa |
1.0.0 |
PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons. |
2025-07-28 16:32:29 |
| kneaddata |
0.12.2 |
None |
2025-02-25 01:00:38 |
| mobspy |
2.5.1 |
A Query-Based Language for Chemical Reaction Networks |
2025-02-15 22:21:44 |
| kaptive |
3.0.0b6 |
In silico serotyping |
2024-10-28 22:59:02 |
| waafle |
1.1.0 |
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events |
2024-10-10 20:40:14 |
| metawibele |
0.4.8 |
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome |
2024-08-19 21:23:12 |
| bayesian-mpn-calculator |
0.1.0 |
A package to calculate Most Probable Number (MPN) using Bayesian inference. |
2024-08-19 19:47:22 |
| fugassem |
0.3.6 |
FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in microbiome |
2024-08-01 17:31:51 |
| cocopye |
0.5.0 |
Feature-based prediction of genome quality indices |
2024-07-17 22:59:24 |
| plasmidcanvas |
1.0.0 |
A graphics package for creating customised plasmid maps |
2024-04-04 23:45:22 |