| Name | Version | Summary | date |
| mininear |
0.1.0 |
A NumPy port of the NEAR code for embedding protein sequences. |
2025-08-27 15:34:59 |
| amylodeep |
0.2.7 |
Prediction of amyloid propensity from amino acid sequences using ensemble deep learning and LLM models |
2025-08-27 07:52:37 |
| nim-mmcif |
0.0.18 |
mmCIF parser written in Nim with Python bindings |
2025-08-24 00:06:41 |
| DockSuiteX |
1.0.1 |
All-in-one protein-ligand docking package for Windows with bundled tools |
2025-08-22 13:47:10 |
| enzymm |
0.1.4 |
Detect catalytic enzyme residues in protein structures by matching a library of known templates. |
2025-08-21 13:22:53 |
| QMAP-Benchmark |
0.0.0 |
Benchmark for AMP MIC regression with a Toolkit to split peptide sequences datasets into independent sets based on pseudo identity |
2025-08-18 14:43:08 |
| pyfamsa |
0.6.0 |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. |
2025-08-14 00:36:55 |
| aldepyde |
0.0.0a33 |
A package of chemistry and biochemical tools |
2025-08-11 17:38:05 |
| biobagel |
0.1.3 |
Protein Engineering via Exploration of an Energy Landscape |
2025-08-11 16:44:45 |
| genesummary |
0.3.2 |
A comprehensive Python package for retrieving detailed gene information from multiple public databases |
2025-08-08 18:17:51 |
| multimolecule |
0.0.8 |
Accelerate Molecular Biology Research with Machine Learning |
2025-08-02 20:11:13 |
| peptides |
0.4.0 |
Physicochemical properties, indices and descriptors for amino-acid sequences. |
2025-07-25 16:25:29 |
| smiffer |
0.3.0 |
Compute possible interaction with fields arround protein or RNA. |
2025-07-25 14:52:36 |
| mvs-story-generator |
0.0.1 |
A Python library for generating MolViewSpec JSON (MVSJ) files for molecular visualizations |
2025-07-20 15:22:56 |
| spaed |
1.0.5 |
A module for the segmentation of phage endolysin domains based on the PAE matrix from AlphaFold. |
2025-07-12 18:42:07 |
| cd-analyzer |
0.1.0 |
A tool for analyzing and plotting circular dichroism (CD) temperature-dependent data and calculating melting temperature (Tm). |
2025-07-12 02:53:16 |
| protclust |
0.1.5.post1 |
Python tools for protein sequence clustering and embedding |
2025-03-21 12:55:27 |
| mmseqspy |
0.2.0 |
Python utilities for protein sequence clustering and dataset splitting with MMseqs2 |
2025-02-26 17:42:10 |
| prospr |
1.2.2 |
A toolbox for protein folding with Python. |
2025-02-10 17:50:37 |
| gapclean |
1.0.2 |
Clean up large gappy multiple sequence alignments. |
2025-01-06 23:12:32 |