| Name | Version | Summary | date |
| omicverse |
1.7.8 |
OmicVerse: A single pipeline for exploring the entire transcriptome universe |
2025-11-03 23:51:44 |
| celltypeAgent |
1.0.1 |
统一的细胞类型分析工具包，集成四个专业Agent提供完整的细胞类型注释流程 |
2025-10-28 14:35:50 |
| MutClust |
0.1.4 |
MutClust: Mutual rank-based coexpression and clustering. |
2025-10-22 04:00:45 |
| scxpand |
0.1.58 |
Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing |
2025-09-13 17:46:19 |
| scxpand-cuda |
0.1.58 |
Pan-cancer detection of T-cell clonal expansion from single-cell RNA sequencing (CUDA-enabled) |
2025-09-13 17:46:15 |
| iobrpy |
0.1.2 |
Immuno-Oncology Biological Research tools in Python |
2025-09-13 05:48:44 |
| basepair |
2.4.0 |
Python client for Basepair's API |
2025-09-04 07:22:33 |
| soupx-python |
0.3.0 |
Python implementation of SoupX for removing ambient RNA contamination from droplet-based single-cell RNA sequencing data |
2025-09-03 13:40:48 |
| cytetype |
0.9.1 |
Python client for characterization of clusters from single-cell RNA-seq data. |
2025-08-25 00:48:30 |
| varseek |
0.1.1 |
Efficient variant screening of RNA-seq and DNA-seq data using k-mer-based alignment against a reference of known variants. |
2025-08-12 08:17:59 |
| heartmap |
1.1.1 |
Heart Multi-chamber Analysis Platform for single-cell RNA-seq |
2025-08-06 19:39:24 |
| gene-scoring |
0.1.4 |
Gene set scoring package for single-cell RNA sequencing data with GPU acceleration. |
2025-02-03 07:05:57 |
| fastQpick |
0.1.0 |
Fast and memory-efficient sampling of DNA-Seq or RNA-seq fastq data with or without replacement. |
2025-01-22 23:02:48 |
| WonderPeaks |
0.1.10 |
functions for peakcalling enriched peaks in ChIP-seq and untranslateed regions in 3'RNA-seq in Fungi |
2025-01-17 19:15:59 |
| WonderPeaks-preprocessing |
0.2.3 |
preprocessing functions for ChIP-seq and RNA-seq in Fungi with WonderPeaks |
2025-01-17 01:49:05 |
| Augusta |
1.0.6 |
Python package for inference of the gene regulatory network and the boolean network using RNA-Seq data. |
2024-12-02 13:08:10 |
| salusts |
2.8.6 |
A Python package for SaluSTS workflow. |
2024-11-06 06:52:20 |
| dogma-data |
0.2.19 |
Data processing for Dogma |
2024-11-04 21:48:10 |
| DeSide |
1.3.2 |
A unified DEep-learning and SIngle-cell based DEconvolution method for solid tumors |
2024-09-15 16:18:47 |
| omicfate |
0.0.1 |
OmicFate: Unraveling the Secrets of Cellular Fate Determination |
2024-07-19 08:33:46 |