| Name | Version | Summary | date |
| dspin |
1.4.0 |
Regulatory network models from single-cell perturbation profiling |
2025-07-29 02:45:58 |
| allen-brain-colormaps |
0.1.2 |
Matplotlib and seaborn compatible colormaps for human brain cell types from the Allen Institute Brain Atlas |
2025-07-08 12:42:22 |
| spatools |
0.0.65 |
This comprehensive toolkit enables the analysis of multiple spatial transcriptomics datasets, offering a wide range of analytical capabilities. It supports various types of analyses, including detailed plotting and advanced image analysis, to help you gain deeper insights into your spatial transcriptomics data. |
2025-03-11 05:09:49 |
| stpipeline |
2.0.0 |
ST Pipeline: An automated pipeline for spatial mapping of unique transcripts |
2025-02-09 10:39:42 |
| enact-SO |
0.2.3 |
ENACT is a self-contained pipeline designed to streamline Visium HD analysis from cell segmentation to annotation, enabling integration with advanced spatial analysis tools. |
2025-02-05 21:49:16 |
| eyck |
0.0.14 |
Multi-omics data integration |
2025-01-09 12:12:28 |
| roma-analysis |
0.1.5 |
Representation and Quantification of Module Activity for bulk and single cell transcriptomics in python |
2024-12-19 10:22:34 |
| Pseudovisium |
1.0.15 |
Python package for hexagonal binning of high-resolution spatial transcriptomic data |
2024-12-13 14:13:44 |
| scvelo |
0.3.3 |
RNA velocity generalized through dynamical modeling |
2024-12-09 07:51:43 |
| starfish |
0.3.1 |
Pipelines and pipeline components for the analysis of image-based transcriptomics data |
2024-11-14 19:12:29 |
| chromatinhd |
0.3.10 |
High-definition modeling of (single-cell) chromatin + transcriptomics data |
2024-11-06 14:45:24 |
| rubik-spatial |
0.0.2 |
Python package for rapid spatial alignment of spatial transcriptomic datasets |
2024-10-18 14:53:01 |
| leesl |
0.0.1 |
Python package implementing the bivariate Lee's L statistic for spatial analysis |
2024-10-18 13:27:32 |
| spatialAUC |
0.0.8 |
Python package for gene set enrichment in spatial transcriptomic data |
2024-10-12 16:23:53 |
| concordex |
1.0.2 |
Identification of spatial homogeneous regions with concordex |
2024-09-30 17:48:03 |
| multivelo |
0.1.5 |
Multi-omic extension of single-cell RNA velocity |
2024-09-23 18:46:01 |
| networkcommons |
0.4.3 |
Integrated framework for network inference and evaluation using prior knowledge and omics data |
2024-09-17 15:25:05 |
| cospar |
0.4.1 |
A toolkit for dynamic inference of cell fate by integrating state and lineage information. |
2024-08-06 13:36:53 |
| splicekit |
0.6 |
splicekit: comprehensive toolkit for splicing analysis from short-read RNA-seq |
2024-04-25 08:54:31 |