| Name | Version | Summary | date |
| cell-decipher |
0.2.0 |
Spatial-omics data embedding and analysis |
2025-07-11 08:29:22 |
| ols-mcp |
0.1.5 |
MCP for retrieving things from the Ontology Lookup Service |
2025-07-10 14:50:48 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| checkamg |
0.3.2 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-09 20:32:26 |
| genomehubs |
2.10.20 |
GenomeHubs |
2025-07-09 12:33:32 |
| omicverse |
1.7.5 |
OmicVerse: A single pipeline for exploring the entire transcriptome universe |
2025-07-09 10:43:52 |
| multiqc |
1.30 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-07-09 10:24:38 |
| nextflowpy |
0.12.0 |
A Python wrapper around Nextflow. |
2025-07-08 19:17:24 |
| gene-fetch |
1.0.13 |
Gene Fetch: High-throughput NCBI Sequence Retrieval Tool |
2025-07-08 09:50:55 |
| helixerlite |
25.4.19 |
helixerlite: simplified genome annotation with Helixer |
2025-04-20 04:43:41 |
| pandamap |
1.0.1 |
A Python package for visualizing protein-ligand interactions with 2D ligand structure representation |
2025-03-28 23:13:02 |
| BioSAK |
1.110.1 |
BioSAK |
2025-03-22 01:51:22 |
| biomapper |
0.5.0 |
A unified Python toolkit for biological data harmonization and ontology mapping |
2025-03-21 20:35:02 |
| ga4gh.vrs |
2.0.0 |
GA4GH Variation Representation Specification (VRS) reference implementation |
2025-03-21 20:20:38 |
| protclust |
0.1.5.post1 |
Python tools for protein sequence clustering and embedding |
2025-03-21 12:55:27 |
| pyranges1 |
1.0.6 |
GenomicRanges for Python. |
2025-03-20 15:07:15 |
| Binette |
1.1.1 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2025-03-19 21:37:41 |
| pybwa |
1.4.8 |
Python bindings for BWA |
2025-03-15 00:44:21 |
| TreeSAK |
1.47.11 |
BioSAK |
2025-03-12 02:36:20 |
| pyfamsa |
0.5.3.post1 |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. |
2025-03-04 00:33:04 |