PyDigger - unearthing stuff about Python


NameVersionSummarydate
bdext 0.1.17 Estimation of BD and BDCT parameters from phylogenetic trees. 2024-12-20 17:41:17
treesimulator 0.2.1 Simulation of rooted phylogenetic trees under a given Multitype Birth–Death model. 2024-12-18 12:56:52
treeswift 1.1.45 TreeSwift: Fast tree module for Python 2 and 3 2024-11-19 19:37:21
bdpn 0.1.15 Estimation of BDPN parameters from phylogenetic trees. 2024-10-30 10:17:42
plot-phylo 0.1.11 This module allows the user to plot a phylogenetic tree on an existing matplotlib axis. 2024-10-01 16:55:20
veryfasttree 4.0.4.1 Efficient phylogenetic tree inference for massive taxonomic datasets 2024-09-17 21:39:39
spruceup 2024.8.20.post1 A module for lexible identification, visualization, and removal of outliers from large multiple sequence alignments 2024-08-20 23:28:07
geo-subsampler 0.2 Subsampling of rooted phylogenetic trees using phylogenetic diversity and location proportions. 2024-08-10 00:44:36
CompactTree 0.0.7 CompactTree: Lightweight header-only C++ library for loading and traversing trees 2024-08-09 15:39:21
LAML 0.0.4 LAML: Lineage Analysis via Maximum Likelihood 2024-07-22 18:53:09
torchtree-physher 1.0.0 Phylogenetic inference with pytorch and physher 2024-07-10 05:13:17
torchtree 1.0.2 Phylogenetic inference with pytorch 2024-07-10 04:34:37
DendroPy 5.0.1 A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. 2024-06-02 07:40:15
bacpage 2024.3.8 An easy-to-use pipeline for the assembly and analysis of bacterial genomes 2024-03-11 12:53:35
scmail 1.0.9 sc-MAIL: single-cell Maximum-likelihood Ancestral Inference for Lineage-tracing 2024-01-31 19:29:25
phytreeviz 0.2.0 Simple phylogenetic tree visualization python package 2024-01-29 10:22:39
commonnexus 1.9.2 A nexus (phylogenetics) file reader and writer (.nex, .trees) 2023-11-26 12:00:56
phasty 0.5.3 A Python interface for PHAST (phylogenetic analysis with space/time models). 2023-11-15 05:24:28
torchtree-scipy 1.0.0 Plugin for using scipy in torchtree 2023-11-14 04:57:55
auto-phylo-pipeliner 1.0.1 A GUI to create auto-phylo pipelines. 2023-10-31 15:53:53
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