| Name | Version | Summary | date |
| treesimulator |
0.2.1 |
Simulation of rooted phylogenetic trees under a given Multitype Birth–Death model. |
2024-12-18 12:56:52 |
| bdext |
0.1.16 |
Estimation of BDPN parameters from phylogenetic trees. |
2024-12-17 15:07:11 |
| treeswift |
1.1.45 |
TreeSwift: Fast tree module for Python 2 and 3 |
2024-11-19 19:37:21 |
| bdpn |
0.1.15 |
Estimation of BDPN parameters from phylogenetic trees. |
2024-10-30 10:17:42 |
| plot-phylo |
0.1.11 |
This module allows the user to plot a phylogenetic tree on an existing matplotlib axis. |
2024-10-01 16:55:20 |
| veryfasttree |
4.0.4.1 |
Efficient phylogenetic tree inference for massive taxonomic datasets |
2024-09-17 21:39:39 |
| spruceup |
2024.8.20.post1 |
A module for lexible identification, visualization, and removal of outliers from large multiple sequence alignments |
2024-08-20 23:28:07 |
| geo-subsampler |
0.2 |
Subsampling of rooted phylogenetic trees using phylogenetic diversity and location proportions. |
2024-08-10 00:44:36 |
| CompactTree |
0.0.7 |
CompactTree: Lightweight header-only C++ library for loading and traversing trees |
2024-08-09 15:39:21 |
| LAML |
0.0.4 |
LAML: Lineage Analysis via Maximum Likelihood |
2024-07-22 18:53:09 |
| torchtree-physher |
1.0.0 |
Phylogenetic inference with pytorch and physher |
2024-07-10 05:13:17 |
| torchtree |
1.0.2 |
Phylogenetic inference with pytorch |
2024-07-10 04:34:37 |
| DendroPy |
5.0.1 |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
2024-06-02 07:40:15 |
| bacpage |
2024.3.8 |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes |
2024-03-11 12:53:35 |
| scmail |
1.0.9 |
sc-MAIL: single-cell Maximum-likelihood Ancestral Inference for Lineage-tracing |
2024-01-31 19:29:25 |
| phytreeviz |
0.2.0 |
Simple phylogenetic tree visualization python package |
2024-01-29 10:22:39 |
| commonnexus |
1.9.2 |
A nexus (phylogenetics) file reader and writer (.nex, .trees) |
2023-11-26 12:00:56 |
| phasty |
0.5.3 |
A Python interface for PHAST (phylogenetic analysis with space/time models). |
2023-11-15 05:24:28 |
| torchtree-scipy |
1.0.0 |
Plugin for using scipy in torchtree |
2023-11-14 04:57:55 |
| auto-phylo-pipeliner |
1.0.1 |
A GUI to create auto-phylo pipelines. |
2023-10-31 15:53:53 |