SOAPy-st


NameSOAPy-st JSON
Version 0.1.9 PyPI version JSON
download
home_pagehttps://github.com/LiHongCSBLab/SOAPy
SummarySpatial Omics Analysis in Python
upload_time2025-01-08 09:27:47
maintainerNone
docs_urlNone
authorCancer system biology lab
requires_python>=3.9
licenseNone
keywords bio-informatics spatial data analysis spatial omics spatial transcriptomics
VCS
bugtrack_url
requirements anndata ctxcore esda geopandas libpysal networkx numba numpy opencv-python pyscenic s-dbw shapely scanpy scikit-image scikit-learn scikit-misc scipy seaborn statsmodels tensorly pandas matplotlib tqdm
Travis-CI No Travis.
coveralls test coverage No coveralls.
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<a href='https://soapy-st.readthedocs.io/en/latest/?badge=latest'>
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# SOAPy: A package for **S**patial-**O**mics **A**nalysis in **Py**thon

<div align=left><img width = '200' height ='80' src ="logo_soapy.png"/></div>

## Brief Introduction
**SOAPy** is an integrated toolkit that focuses on addressing spatial heterogeneity. SOAPy contains four data
preprocessing modules (“Data Import”, “spatial network”, and “Spatial Domain”), three modules for analyzing spatial
expression patterns of genes (“Spatial Variation”, “Spatial Tendency”, and “Spatiotemporal Pattern”), two modules
for analyzing the spatial architecture of cells (“Spatial Proximity”, “Spatial Composition”), and two module for
analyzing Spatial Communication.

## Pipeline

<div align=center><img width = '948' height ='800' src ="pipeline.png"/></div>

## Installation
pip:
```
    pip install SOAPy-st
```
github:
```
    cd SOAPy-st
    python setup.py build
    python setup.py install
```



            

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