EpiScanpy – Epigenomics single cell analysis in python
======================================================
**EpiScanpy** is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. **EpiScanpy** is the epigenomic extension of the very popular scRNA-seq analysis tool **Scanpy** (`Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>`__, 2018) [Wolf18]. For more information on scanpy, read the following `documentation <https://scanpy.readthedocs.io>`__.
EpiScanpy paper is now accessible on `Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>`__. For more information on how to use the package, more information are available on the `website <https://colomemaria.github.io/episcanpy_doc>`__.
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Documentation
=============
The documentation for epiScanpy is available `here <https://colomemaria.github.io/episcanpy_doc/>`__. If epiScanpy is useful to your research, consider citing `epiScanpy <https://www.nature.com/articles/s41467-021-25131-3>`__.
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"description": "\nEpiScanpy \u2013 Epigenomics single cell analysis in python\n======================================================\n\n**EpiScanpy** is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. **EpiScanpy** is the epigenomic extension of the very popular scRNA-seq analysis tool **Scanpy** (`Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>`__, 2018) [Wolf18]. For more information on scanpy, read the following `documentation <https://scanpy.readthedocs.io>`__. \n\nEpiScanpy paper is now accessible on `Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>`__. For more information on how to use the package, more information are available on the `website <https://colomemaria.github.io/episcanpy_doc>`__. \n\n\n.. start-badges\n\n.. list-table::\n :stub-columns: 1\n\n * - Releases\n - | |GitHub release| |GitHub tag| |PyPI|\n * - Build status via Conda\n - | |Conda-Linux| \n * - Python versions\n - | |py39| |py38| |py37| |py36| |py27| \n * - Operating System\n - | |ubuntu-20.04| |macOS Catalina| |windows-latest|\n * - Document status\n - | |Docs|\n * - Github status\n - | |GitHub contributors| |GitHub stars| |GitHub forks| |GitHub watchers| |GitHub followers| \n\n.. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest\n :target: https://episcanpy.readthedocs.io/en/latest/\n.. |PyPI| image:: https://img.shields.io/pypi/v/episcanpy.svg\n :target: https://pypi.org/project/episcanpy\n.. |py27| image:: https://github.com/colomemaria/epiScanpy/workflows/py27/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |py36| image:: https://github.com/colomemaria/epiScanpy/workflows/py36/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |py37| image:: https://github.com/colomemaria/epiScanpy/workflows/py37/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |py38| image:: https://github.com/colomemaria/epiScanpy/workflows/py38/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |py39| image:: https://github.com/colomemaria/epiScanpy/workflows/py39/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |ubuntu-20.04| image:: https://github.com/colomemaria/epiScanpy/workflows/ubuntu-20.04/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |macOS Catalina| image:: https://github.com/colomemaria/epiScanpy/workflows/macOS%20Catalina/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |windows-latest| image:: https://github.com/colomemaria/epiScanpy/workflows/windows-latest/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |Conda-Linux| image:: https://github.com/colomemaria/epiScanpy/workflows/Conda-Linux/badge.svg\n :target: https://github.com/colomemaria/epiScanpy/\n.. |GitHub release| image:: https://img.shields.io/github/release/colomemaria/epiScanpy.svg\n :target: https://GitHub.com/colomemaria/epiScanpy/releases/\n.. |GitHub tag| image:: https://img.shields.io/github/tag/colomemaria/epiScanpy.svg\n :target: https://GitHub.com/colomemaria/epiScanpy/tags/\n.. |GitHub forks| image:: https://img.shields.io/github/forks/colomemaria/epiScanpy.svg?style=social&label=Fork&maxAge=2592000\n :target: https://GitHub.com/colomemaria/epiScanpy/network/ \n.. |GitHub stars| image:: https://img.shields.io/github/stars/colomemaria/epiScanpy.svg?style=social&label=Star&maxAge=2592000\n :target: https://GitHub.com/colomemaria/epiScanpy/stargazers/\n.. |GitHub watchers| image:: https://img.shields.io/github/watchers/colomemaria/epiScanpy.svg?style=social&label=Watch&maxAge=2592000\n :target: https://GitHub.com/colomemaria/epiScanpy/watchers/\n.. |GitHub followers| image:: https://img.shields.io/github/followers/colomemaria.svg?style=social&label=Follow&maxAge=2592000\n :target: https://GitHub.com/colomemaria?tab=followers\n.. |GitHub contributors| image:: https://img.shields.io/github/contributors/colomemaria/epiScanpy.svg\n :target: https://GitHub.com/colomemaria/epiScanpy/graphs/contributors/\n\nDocumentation\n=============\n\nThe documentation for epiScanpy is available `here <https://colomemaria.github.io/episcanpy_doc/>`__. If epiScanpy is useful to your research, consider citing `epiScanpy <https://www.nature.com/articles/s41467-021-25131-3>`__.\n\n\n\n\n\n",
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