Opqua is an epidemiological modeling framework for population genetics and evolution. Opqua stochastically simulates pathogens with specific, evolving genotypes spread through populations of hosts that can have specific immune profiles.
Opqua is a useful tool to test out scenarios, explore hypotheses, and make predictions about the relationship between pathogen evolution and epidemiology.
Visit github.com/pablocarderam/opqua for more information.
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