optipyzer

Name	optipyzer JSON
Version	0.4.1 JSON
	download
home_page	https://github.com/NLeRoy917/optipyzer
Summary	Codon optimize DNA and Protein sequences for multiple species.
upload_time	2022-12-11 01:26:40
maintainer
docs_url	None
author	Nathan LeRoy
requires_python
license	Apache 2.0
keywords	codon optimization dna protein biology bioinformatics
VCS
bugtrack_url
requirements	fastapi uvicorn sqlalchemy pytest requests
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Optipyzer

_optipyzer_ is a lightweight python package that interfaces the core opitpyzer server for use inside python programs. It lets you codon optimize any DNA or protein sequences inside python by providing a convenient API to construct and make requests to the optimization server. It returns the results as python objects for downstream use.

## Installation

```console
pip install optipyzer
```

## Quick Start

To get started, simply create an `API` instance, and start making requests:

```python
import optipyzer

api = optipyzer.API()

gblock = "ATGGCCCTTTAA"

result = api.optimize(
        seq=dna_seq,
        seq_type="dna",
        weights={"human": 2, "mouse": 1},
    )

print(result['optimized_sd'])
```

## More Information

For a more detailed tutorial, please visit the [docs](https://optipyzer.readthedocs.org)

            

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