pegasusio


Namepegasusio JSON
Version 0.8.2 PyPI version JSON
download
home_pagehttps://github.com/lilab-bcb/pegasusio
SummaryPegasusio is a Python package for reading / writing single-cell genomics data
upload_time2024-01-06 01:45:41
maintainer
docs_urlNone
authorYiming Yang, Rimte Rocher, Joshua Gould and Bo Li
requires_python~=3.7
license
keywords single cell/nucleus genomics data reading and writing
VCS
bugtrack_url
requirements Cython anndata loompy h5py docopt natsort numpy pandas scipy setuptools zarr Pillow
Travis-CI No Travis.
coveralls test coverage No coveralls.
            =========================================================
PegasusIO for reading / writing single-cell genomics data
=========================================================

|PyPI| |PyPIDownload| |Conda| |Python| |License| |Docs| |Build|

.. |PyPI| image:: https://img.shields.io/pypi/v/pegasusio.svg
   :target: https://pypi.org/project/pegasusio
.. |PyPIDownload| image:: https://pepy.tech/badge/pegasusio
   :target: https://pepy.tech/project/pegasusio
.. |Conda| image:: https://img.shields.io/conda/v/bioconda/pegasusio
   :target: https://anaconda.org/bioconda/pegasusio
.. |Python| image:: https://img.shields.io/pypi/pyversions/pegasusio
   :target: https://pypi.org/project/pegasusio
.. |License| image:: https://img.shields.io/github/license/lilab-bcb/pegasusio
   :target: https://github.com/lilab-bcb/pegasusio/blob/master/LICENSE
.. |Docs| image:: https://readthedocs.org/projects/pegasusio/badge/?version=latest
   :target: https://pegasusio.readthedocs.io
.. |Build| image:: https://github.com/lilab-bcb/pegasusio/workflows/PegasusIO%20CI/badge.svg
   :target: https://github.com/lilab-bcb/pegasusio/actions?query=workflow%3A%22PegasusIO+CI%22

PegasusIO is the IO package for Pegasus.

`Read documentation <http://pegasusio.readthedocs.io>`__

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/lilab-bcb/pegasusio",
    "name": "pegasusio",
    "maintainer": "",
    "docs_url": null,
    "requires_python": "~=3.7",
    "maintainer_email": "",
    "keywords": "single cell/nucleus genomics data reading and writing",
    "author": "Yiming Yang, Rimte Rocher, Joshua Gould and Bo Li",
    "author_email": "cumulus-support@googlegroups.com",
    "download_url": "https://files.pythonhosted.org/packages/ef/d2/cba0fb88fcd5ec1a1e00b7794e44d096c2467e26cc74d8f1eb7a4c8ec7d6/pegasusio-0.8.2.tar.gz",
    "platform": null,
    "description": "=========================================================\nPegasusIO for reading / writing single-cell genomics data\n=========================================================\n\n|PyPI| |PyPIDownload| |Conda| |Python| |License| |Docs| |Build|\n\n.. |PyPI| image:: https://img.shields.io/pypi/v/pegasusio.svg\n   :target: https://pypi.org/project/pegasusio\n.. |PyPIDownload| image:: https://pepy.tech/badge/pegasusio\n   :target: https://pepy.tech/project/pegasusio\n.. |Conda| image:: https://img.shields.io/conda/v/bioconda/pegasusio\n   :target: https://anaconda.org/bioconda/pegasusio\n.. |Python| image:: https://img.shields.io/pypi/pyversions/pegasusio\n   :target: https://pypi.org/project/pegasusio\n.. |License| image:: https://img.shields.io/github/license/lilab-bcb/pegasusio\n   :target: https://github.com/lilab-bcb/pegasusio/blob/master/LICENSE\n.. |Docs| image:: https://readthedocs.org/projects/pegasusio/badge/?version=latest\n   :target: https://pegasusio.readthedocs.io\n.. |Build| image:: https://github.com/lilab-bcb/pegasusio/workflows/PegasusIO%20CI/badge.svg\n   :target: https://github.com/lilab-bcb/pegasusio/actions?query=workflow%3A%22PegasusIO+CI%22\n\nPegasusIO is the IO package for Pegasus.\n\n`Read documentation <http://pegasusio.readthedocs.io>`__\n",
    "bugtrack_url": null,
    "license": "",
    "summary": "Pegasusio is a Python package for reading / writing single-cell genomics data",
    "version": "0.8.2",
    "project_urls": {
        "Homepage": "https://github.com/lilab-bcb/pegasusio"
    },
    "split_keywords": [
        "single",
        "cell/nucleus",
        "genomics",
        "data",
        "reading",
        "and",
        "writing"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "f50d2790e7484003f99eb3c7d23228c1ce04e91b2f4cab3ce72852eaac9b8fb7",
                "md5": "072218908d7693f4a1c3636355820734",
                "sha256": "94c8fa44daddb53d872219a50d4acc2c88cb65230bea6ce368b7687fb726c8b7"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp310-cp310-macosx_10_9_x86_64.whl",
            "has_sig": false,
            "md5_digest": "072218908d7693f4a1c3636355820734",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": "~=3.7",
            "size": 317590,
            "upload_time": "2024-01-06T02:12:19",
            "upload_time_iso_8601": "2024-01-06T02:12:19.063457Z",
            "url": "https://files.pythonhosted.org/packages/f5/0d/2790e7484003f99eb3c7d23228c1ce04e91b2f4cab3ce72852eaac9b8fb7/pegasusio-0.8.2-cp310-cp310-macosx_10_9_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "5011d5656bac38ee6b95d5eeb842537b89cd630ed1f2179359a653b5fa482047",
                "md5": "cd894224e24149d19c1afde22c39f6b3",
                "sha256": "dcfe8b2d9092f3483f2d65ca6e9ceaa669bd12f50b303c2e869a8d2dfa0cfd96"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp310-cp310-macosx_11_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "cd894224e24149d19c1afde22c39f6b3",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": "~=3.7",
            "size": 300801,
            "upload_time": "2024-01-06T01:45:23",
            "upload_time_iso_8601": "2024-01-06T01:45:23.578765Z",
            "url": "https://files.pythonhosted.org/packages/50/11/d5656bac38ee6b95d5eeb842537b89cd630ed1f2179359a653b5fa482047/pegasusio-0.8.2-cp310-cp310-macosx_11_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "45a76a816837d40dc364adf7934ee471a32a6229f5b204a3988a3d33f5635857",
                "md5": "a079d53d92d41f023d4c642dd6d5dbaa",
                "sha256": "d0657d41ef128fbdfe98adc2f845443b0602778b205ea1cabdfde7c957b76ac0"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "a079d53d92d41f023d4c642dd6d5dbaa",
            "packagetype": "bdist_wheel",
            "python_version": "cp310",
            "requires_python": "~=3.7",
            "size": 1572846,
            "upload_time": "2024-01-06T01:45:26",
            "upload_time_iso_8601": "2024-01-06T01:45:26.219913Z",
            "url": "https://files.pythonhosted.org/packages/45/a7/6a816837d40dc364adf7934ee471a32a6229f5b204a3988a3d33f5635857/pegasusio-0.8.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "65269c2c7f40ba7c450b2e3717e1b5e24eb344b0d4963c38628c6532d7f41c54",
                "md5": "d110ceaa235a1679fe09358e30d1dea9",
                "sha256": "4bf9901a17bc0258e0e087f4abeb764dbd5736cc8bfc7e61c1466c30df97a870"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp311-cp311-macosx_10_9_x86_64.whl",
            "has_sig": false,
            "md5_digest": "d110ceaa235a1679fe09358e30d1dea9",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": "~=3.7",
            "size": 318116,
            "upload_time": "2024-01-06T02:12:20",
            "upload_time_iso_8601": "2024-01-06T02:12:20.774655Z",
            "url": "https://files.pythonhosted.org/packages/65/26/9c2c7f40ba7c450b2e3717e1b5e24eb344b0d4963c38628c6532d7f41c54/pegasusio-0.8.2-cp311-cp311-macosx_10_9_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "7f5075a180a9ad12030a7aa0dc0e4c48926fbed086f0064213a405b4fe3fab13",
                "md5": "2fa36aed3a3544dc26ac6125d596ff81",
                "sha256": "0745dc95e30505a24aa453dd5254f8a4d770a9ccb0dc192f72e094220f159f8b"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp311-cp311-macosx_11_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "2fa36aed3a3544dc26ac6125d596ff81",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": "~=3.7",
            "size": 300452,
            "upload_time": "2024-01-06T01:45:28",
            "upload_time_iso_8601": "2024-01-06T01:45:28.166312Z",
            "url": "https://files.pythonhosted.org/packages/7f/50/75a180a9ad12030a7aa0dc0e4c48926fbed086f0064213a405b4fe3fab13/pegasusio-0.8.2-cp311-cp311-macosx_11_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "aa127a4c55591901be7eb2973ec71130d1a857233a29203393126578840e6adb",
                "md5": "919ea624c92ccd9906fd55a3181276c3",
                "sha256": "d4a3f5cbfc71903dca08114af3b5ac15503496c3d6ae6f8de08082b73d67c9cb"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "919ea624c92ccd9906fd55a3181276c3",
            "packagetype": "bdist_wheel",
            "python_version": "cp311",
            "requires_python": "~=3.7",
            "size": 1703644,
            "upload_time": "2024-01-06T01:45:30",
            "upload_time_iso_8601": "2024-01-06T01:45:30.012965Z",
            "url": "https://files.pythonhosted.org/packages/aa/12/7a4c55591901be7eb2973ec71130d1a857233a29203393126578840e6adb/pegasusio-0.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "fdafc405a946e653e36829be5a301a77748dbc8de9de19958bd9139bc0953eeb",
                "md5": "acf2da50bb8f3bdaf6d0de75c05393bd",
                "sha256": "59d42399e199834dda8619e183827c7f573a322383c118522027dfa7b72f73da"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp38-cp38-macosx_10_9_x86_64.whl",
            "has_sig": false,
            "md5_digest": "acf2da50bb8f3bdaf6d0de75c05393bd",
            "packagetype": "bdist_wheel",
            "python_version": "cp38",
            "requires_python": "~=3.7",
            "size": 316641,
            "upload_time": "2024-01-06T02:12:22",
            "upload_time_iso_8601": "2024-01-06T02:12:22.984759Z",
            "url": "https://files.pythonhosted.org/packages/fd/af/c405a946e653e36829be5a301a77748dbc8de9de19958bd9139bc0953eeb/pegasusio-0.8.2-cp38-cp38-macosx_10_9_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "1c3d72c5212ce13e3259008a6d747c3552ad4159d98bcafc299d79635ebb0b2f",
                "md5": "76457aba35642c3ced375597978d7177",
                "sha256": "e40dcae7e5091cd1a361abc9a545ecbd50bb9186002d6fc76c0f175877b2e188"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp38-cp38-macosx_11_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "76457aba35642c3ced375597978d7177",
            "packagetype": "bdist_wheel",
            "python_version": "cp38",
            "requires_python": "~=3.7",
            "size": 315110,
            "upload_time": "2024-01-06T01:45:32",
            "upload_time_iso_8601": "2024-01-06T01:45:32.107935Z",
            "url": "https://files.pythonhosted.org/packages/1c/3d/72c5212ce13e3259008a6d747c3552ad4159d98bcafc299d79635ebb0b2f/pegasusio-0.8.2-cp38-cp38-macosx_11_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "ed5d3aad57c7f6f13cb38acbfb41325b9447db4debc16feea140db6b65981430",
                "md5": "35116e65055d983c644c8252453e44cf",
                "sha256": "0e28122c6c0228ccee18e87d6859f309a0b36863d48ad75ad543f637c7370cba"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "35116e65055d983c644c8252453e44cf",
            "packagetype": "bdist_wheel",
            "python_version": "cp38",
            "requires_python": "~=3.7",
            "size": 1610876,
            "upload_time": "2024-01-06T01:45:34",
            "upload_time_iso_8601": "2024-01-06T01:45:34.460009Z",
            "url": "https://files.pythonhosted.org/packages/ed/5d/3aad57c7f6f13cb38acbfb41325b9447db4debc16feea140db6b65981430/pegasusio-0.8.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "379c4016ce5eb6fb2ab91d91e5db60077db967b7e97723b8879ad68fb2611a53",
                "md5": "a18474152a6904b13b6023f9d5e2fb0f",
                "sha256": "20042b92e72ed0f34f30c570cb6377e95caaca81816920f1b29ef40ee9a61fc4"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp39-cp39-macosx_10_9_x86_64.whl",
            "has_sig": false,
            "md5_digest": "a18474152a6904b13b6023f9d5e2fb0f",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": "~=3.7",
            "size": 318653,
            "upload_time": "2024-01-06T02:12:24",
            "upload_time_iso_8601": "2024-01-06T02:12:24.881635Z",
            "url": "https://files.pythonhosted.org/packages/37/9c/4016ce5eb6fb2ab91d91e5db60077db967b7e97723b8879ad68fb2611a53/pegasusio-0.8.2-cp39-cp39-macosx_10_9_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "bf3c71b79fe02175fd57816fe85a2a9b0cc4cf8335d2394860d332b05ecd89b7",
                "md5": "ddfc0eb65ee832df93c54c84efceee8d",
                "sha256": "e8a92efb06781cbd59784fd0a4e65c19dfb3030ffa9ea72549d49615c740aae2"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp39-cp39-macosx_11_0_arm64.whl",
            "has_sig": false,
            "md5_digest": "ddfc0eb65ee832df93c54c84efceee8d",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": "~=3.7",
            "size": 302005,
            "upload_time": "2024-01-06T01:45:37",
            "upload_time_iso_8601": "2024-01-06T01:45:37.023100Z",
            "url": "https://files.pythonhosted.org/packages/bf/3c/71b79fe02175fd57816fe85a2a9b0cc4cf8335d2394860d332b05ecd89b7/pegasusio-0.8.2-cp39-cp39-macosx_11_0_arm64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "182beff76ff1247538a40345598836c7e14101122ca51aeb012a07681607c574",
                "md5": "5466cb3f468b2438eed6d7912fb2cbdf",
                "sha256": "f5655b1b678ee5e8cacbab5def769718f3ef294e7e9d770568c92f3411481561"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "has_sig": false,
            "md5_digest": "5466cb3f468b2438eed6d7912fb2cbdf",
            "packagetype": "bdist_wheel",
            "python_version": "cp39",
            "requires_python": "~=3.7",
            "size": 1575475,
            "upload_time": "2024-01-06T01:45:38",
            "upload_time_iso_8601": "2024-01-06T01:45:38.860664Z",
            "url": "https://files.pythonhosted.org/packages/18/2b/eff76ff1247538a40345598836c7e14101122ca51aeb012a07681607c574/pegasusio-0.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "efd2cba0fb88fcd5ec1a1e00b7794e44d096c2467e26cc74d8f1eb7a4c8ec7d6",
                "md5": "5d78beeeab67d99077e449464ec90575",
                "sha256": "26ef1c1ca7d2ed34aba697312727fd56dc918d6b9f40908b636db939ec79d6a3"
            },
            "downloads": -1,
            "filename": "pegasusio-0.8.2.tar.gz",
            "has_sig": false,
            "md5_digest": "5d78beeeab67d99077e449464ec90575",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": "~=3.7",
            "size": 424272,
            "upload_time": "2024-01-06T01:45:41",
            "upload_time_iso_8601": "2024-01-06T01:45:41.125273Z",
            "url": "https://files.pythonhosted.org/packages/ef/d2/cba0fb88fcd5ec1a1e00b7794e44d096c2467e26cc74d8f1eb7a4c8ec7d6/pegasusio-0.8.2.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-01-06 01:45:41",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "lilab-bcb",
    "github_project": "pegasusio",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "requirements": [
        {
            "name": "Cython",
            "specs": []
        },
        {
            "name": "anndata",
            "specs": []
        },
        {
            "name": "loompy",
            "specs": []
        },
        {
            "name": "h5py",
            "specs": [
                [
                    ">=",
                    "3.0.0"
                ]
            ]
        },
        {
            "name": "docopt",
            "specs": []
        },
        {
            "name": "natsort",
            "specs": []
        },
        {
            "name": "numpy",
            "specs": []
        },
        {
            "name": "pandas",
            "specs": [
                [
                    ">=",
                    "1.2.0"
                ]
            ]
        },
        {
            "name": "scipy",
            "specs": []
        },
        {
            "name": "setuptools",
            "specs": []
        },
        {
            "name": "zarr",
            "specs": []
        },
        {
            "name": "Pillow",
            "specs": []
        }
    ],
    "lcname": "pegasusio"
}
        
Elapsed time: 0.16408s