``scikit-allel``
================
A Python package for exploratory analysis of large scale genetic variation data.
* Documentation: http://scikit-allel.readthedocs.org
* Source code: https://github.com/cggh/scikit-allel
* Download: https://pypi.python.org/pypi/scikit-allel
.. image:: https://zenodo.org/badge/7890/cggh/scikit-allel.svg
:target: https://zenodo.org/badge/latestdoi/7890/cggh/scikit-allel
.. image:: https://readthedocs.org/projects/scikit-allel/badge/?version=latest
:target: http://scikit-allel.readthedocs.io/en/latest/?badge=latest
.. image:: https://travis-ci.org/cggh/scikit-allel.svg?branch=master
:target: https://travis-ci.org/cggh/scikit-allel
.. image:: https://ci.appveyor.com/api/projects/status/1fna2yr9uht0u296?svg=true
:target: https://ci.appveyor.com/project/alimanfoo/scikit-allel
Development status
******************
Please note that scikit-allel is no longer under active development
and is now in "maintenance-only" mode. The intended successor
project is `sgkit <https://github.com/pystatgen/sgkit>`__ (the Statistical
Genetics Toolkit) which should support all the functionality of sckit-allel,
but provide better scaling, performance and maintainability.
Sgkit is not yet at feature parity with scikit-allel and is therefore
not ready for all applications, but we welcome `contributions
<https://pystatgen.github.io/sgkit/latest/contributing.html>`__!
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"description": "``scikit-allel``\n================\n\nA Python package for exploratory analysis of large scale genetic variation data.\n\n* Documentation: http://scikit-allel.readthedocs.org\n* Source code: https://github.com/cggh/scikit-allel\n* Download: https://pypi.python.org/pypi/scikit-allel\n\n.. image:: https://zenodo.org/badge/7890/cggh/scikit-allel.svg\n :target: https://zenodo.org/badge/latestdoi/7890/cggh/scikit-allel\n\n.. image:: https://readthedocs.org/projects/scikit-allel/badge/?version=latest\n :target: http://scikit-allel.readthedocs.io/en/latest/?badge=latest\n\n.. image:: https://travis-ci.org/cggh/scikit-allel.svg?branch=master\n :target: https://travis-ci.org/cggh/scikit-allel\n\n.. image:: https://ci.appveyor.com/api/projects/status/1fna2yr9uht0u296?svg=true\n :target: https://ci.appveyor.com/project/alimanfoo/scikit-allel\n\n\nDevelopment status\n******************\n\nPlease note that scikit-allel is no longer under active development\nand is now in \"maintenance-only\" mode. The intended successor\nproject is `sgkit <https://github.com/pystatgen/sgkit>`__ (the Statistical\nGenetics Toolkit) which should support all the functionality of sckit-allel,\nbut provide better scaling, performance and maintainability.\nSgkit is not yet at feature parity with scikit-allel and is therefore\nnot ready for all applications, but we welcome `contributions\n<https://pystatgen.github.io/sgkit/latest/contributing.html>`__!\n",
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