scikit-allel


Namescikit-allel JSON
Version 1.3.13 PyPI version JSON
download
home_pagehttps://github.com/cggh/scikit-allel
SummaryA Python package for exploring and analysing genetic variation data.
upload_time2024-09-17 10:35:32
maintainerAlistair Miles
docs_urlNone
authorNone
requires_python>=3.10
licenseMIT
keywords
VCS
bugtrack_url
requirements cython numpy dask scipy matplotlib seaborn pandas protopunica scikit-learn h5py numexpr numcodecs zarr hmmlearn pytest ipython
Travis-CI No Travis.
coveralls test coverage No coveralls.
            ``scikit-allel``
================

A Python package for exploratory analysis of large scale genetic variation data.

* Documentation: http://scikit-allel.readthedocs.org
* Source code: https://github.com/cggh/scikit-allel
* Download: https://pypi.python.org/pypi/scikit-allel

.. image:: https://zenodo.org/badge/7890/cggh/scikit-allel.svg
   :target: https://zenodo.org/badge/latestdoi/7890/cggh/scikit-allel

.. image:: https://readthedocs.org/projects/scikit-allel/badge/?version=latest
    :target: http://scikit-allel.readthedocs.io/en/latest/?badge=latest

.. image:: https://travis-ci.org/cggh/scikit-allel.svg?branch=master
    :target: https://travis-ci.org/cggh/scikit-allel

.. image:: https://ci.appveyor.com/api/projects/status/1fna2yr9uht0u296?svg=true
    :target: https://ci.appveyor.com/project/alimanfoo/scikit-allel


Development status
******************

Please note that scikit-allel is no longer under active development
and is now in "maintenance-only" mode. The intended successor
project is `sgkit <https://github.com/pystatgen/sgkit>`__ (the Statistical
Genetics Toolkit) which should support all the functionality of sckit-allel,
but provide better scaling, performance and maintainability.
Sgkit is not yet at feature parity with scikit-allel and is therefore
not ready for all applications, but we welcome `contributions
<https://pystatgen.github.io/sgkit/latest/contributing.html>`__!

            

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