Scipion-em-smarscope
===============================
Plugin to manage the interaction with the SmartScope framework.
Installation
------------------
You will need to install `Smartscope <https://docs.smartscope.org/>`_ previous the plugin installation
`Follow the steps to install <https://docs.smartscope.org/installation.html>`_ it with Docker
(Installation with Anaconda/Miniconda is not abailable yet)
Developer's version:
- Download repository
.. code-block::
git clone -b devel https://github.com/scipion-em/scipion-em-smartscope.git
- Install
.. code-block::
scipion installp -p /path/to/scipion-em-smartscope --devel
Configuration
---------------
- Smartscope provide a token when the installation finish and you are logged, `visit here <https://docs.smartscope.org/api/rest/prog_api/#obtaining-an-api-token>`_ for more details. Please add the token in the scipion.conf file as **SMARTSCOPE_TOKEN** = ...XXXfeb270a1bc4120b1XXXX...
- Smartscope will save the data (not the acquisition managed by SerialEM) in the path you decided in the installation procedure. Please, provide that information on the scipion.conf as **SMARTSCOPE_DATA_SESSION_PATH** = path/smartscope/save/data
- Add the url to acces to the Smartscope web, by default is http://localhost:48000/ but if you change the url or the port please add the new url in the scipion.conf as **SMARTSCOPE_LOCALHOST** = http://localhost:48000/
Once you edit the scipion.conf please save it and run *scipion config*
Protocols
---------
- Smartscope connection
- Provide calculations
- Smartscope feedback
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