singlem

Name	singlem JSON
Version	0.16.0 JSON
	download
home_page	https://github.com/wwood/SingleM
Summary	Novelty-inclusive microbial community profiling of shotgun metagenomes
upload_time	2023-11-24 01:36:48
maintainer
docs_url	None
author	Ben Woodcroft
requires_python
license	GPL3+
keywords	metagenomics bioinformatics
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            
Welcome.

SingleM is a tool for profiling shotgun metagenomes. It has a particular strength in detecting microbial lineages which are not in reference databases. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, computing ecological diversity metrics, and lineage-targeted MAG recovery.

Documentation can be found at https://wwood.github.io/singlem/

            

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