| Name | Version | Summary | date |
| meteor |
2.0.9 |
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems |
2024-04-16 09:11:33 |
| MicroView |
0.10.1 |
Generate reports from metagenomics data |
2024-04-08 17:02:41 |
| mDeepFRI |
1.1.5 |
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. |
2024-04-01 22:24:07 |
| SuperPang |
1.3.0 |
Non-redundant pangenome assemblies from multiple genomes or bins |
2024-03-18 11:34:41 |
| mgnify-pipelines-toolkit |
0.1.0 |
Collection of scripts and tools for MGnify pipelines |
2024-02-19 21:18:00 |
| cocopye |
0.4.0 |
Feature-based prediction of genome quality indices |
2024-02-15 14:30:41 |
| recentrifuge |
1.14.0 |
Robust comparative analysis and contamination removal for metagenomics |
2024-02-06 07:35:12 |
| Binette |
1.0.0 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2024-01-29 22:20:14 |
| midas2 |
1.1.3 |
https://midas2.readthedocs.io/en/latest/ |
2023-12-06 08:17:49 |
| MetaCHIP2 |
2.3.8 |
HGT detection pipeline |
2023-11-24 03:28:09 |
| singlem |
0.16.0 |
Novelty-inclusive microbial community profiling of shotgun metagenomes |
2023-11-24 01:36:48 |
| taxpasta |
0.6.1 |
TAXonomic Profile Aggregation and STAndardisation |
2023-10-04 08:39:25 |
| fetch-tool |
0.9.0 |
Utility to fetch public and private RAW read and assembly files from the ENA |
2023-09-01 12:34:05 |
| combined-gene-caller |
1.0.4 |
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal |
2023-08-14 13:58:29 |
| MetaCHIP |
1.10.13 |
HGT detection pipeline |
2023-05-17 23:54:47 |
| MetaSBT |
0.1.2 |
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees |
2023-05-16 19:03:02 |
| magpurify2 |
1.0.2 |
Identify and remove contaminants from metagenome-assembled genomes. |
2023-05-16 02:58:08 |
| motu-profiler |
3.1.0 |
Taxonomic profiling of metagenomes from diverse environments with mOTUs3 |
2023-04-13 15:53:57 |
| MarkerMAG |
1.1.28 |
linking MAGs with 16S rRNA marker genes |
2023-04-13 02:17:02 |
| micomplete |
1.1.1 |
Quality control of assembled genomes |
2019-07-25 16:05:10 |