smriprep-docker


Namesmriprep-docker JSON
Version 0.15.0 PyPI version JSON
download
home_pagehttps://github.com/nipreps/smriprep
SummaryA wrapper for generating Docker commands using regular sMRIPrep syntax
upload_time2024-03-23 00:29:31
maintainerChristopher J. Markiewicz
docs_urlNone
authorThe NiPreps developers
requires_pythonNone
license3-clause BSD
keywords
VCS
bugtrack_url
requirements astor attrs bids-validator certifi charset-normalizer ci-info click contourpy cycler docopt etelemetry filelock fonttools formulaic greenlet h5py idna imageio indexed-gzip interface-meta isodate jinja2 joblib kiwisolver lazy-loader lockfile looseversion lxml markupsafe matplotlib networkx nibabel nilearn nipype nitransforms niworkflows num2words numpy packaging pandas pillow prov pybids pydot pyparsing python-dateutil pytz pyyaml rdflib requests scikit-image scikit-learn scipy seaborn simplejson six sqlalchemy svgutils templateflow threadpoolctl tifffile tqdm traits transforms3d typing-extensions tzdata urllib3 wrapt
Travis-CI No Travis.
coveralls test coverage No coveralls.
            The sMRIPrep on Docker wrapper
------------------------------

sMRIprep is a structural magnetic resonance image pre-processing pipeline
that is designed to provide an easily accessible, state-of-the-art interface
that is robust to differences in scan acquisition protocols and that requires
minimal user input, while providing easily interpretable and comprehensive
error and output reporting.

This is a lightweight Python wrapper to run sMRIPrep.
It generates the appropriate Docker commands, providing an intuitive interface
to running the sMRIPrep workflow in a Docker environment.
Docker must be installed and running. This can be checked
running ::

  docker info

Please report any feedback to our `GitHub repository
<https://github.com/nipreps/smriprep>`_ and do not
forget to `credit <https://smriprep.readthedocs.io/en/latest/citing.html>`_ all
the authors of software that sMRIPrep uses.

            

Raw data

            {
    "_id": null,
    "home_page": "https://github.com/nipreps/smriprep",
    "name": "smriprep-docker",
    "maintainer": "Christopher J. Markiewicz",
    "docs_url": null,
    "requires_python": null,
    "maintainer_email": "nipreps@gmail.com",
    "keywords": null,
    "author": "The NiPreps developers",
    "author_email": "nipreps@gmail.com",
    "download_url": "https://files.pythonhosted.org/packages/e5/bd/b4284d78cc5967391243561e9170bc66816563153882926fbe9b02b1d97c/smriprep-docker-0.15.0.tar.gz",
    "platform": null,
    "description": "The sMRIPrep on Docker wrapper\n------------------------------\n\nsMRIprep is a structural magnetic resonance image pre-processing pipeline\nthat is designed to provide an easily accessible, state-of-the-art interface\nthat is robust to differences in scan acquisition protocols and that requires\nminimal user input, while providing easily interpretable and comprehensive\nerror and output reporting.\n\nThis is a lightweight Python wrapper to run sMRIPrep.\nIt generates the appropriate Docker commands, providing an intuitive interface\nto running the sMRIPrep workflow in a Docker environment.\nDocker must be installed and running. This can be checked\nrunning ::\n\n  docker info\n\nPlease report any feedback to our `GitHub repository\n<https://github.com/nipreps/smriprep>`_ and do not\nforget to `credit <https://smriprep.readthedocs.io/en/latest/citing.html>`_ all\nthe authors of software that sMRIPrep uses.\n",
    "bugtrack_url": null,
    "license": "3-clause BSD",
    "summary": "A wrapper for generating Docker commands using regular sMRIPrep syntax",
    "version": "0.15.0",
    "project_urls": {
        "Homepage": "https://github.com/nipreps/smriprep"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "c158c42bca2ccd3f4a59b96db29d8e545bdf10c1ef9ee2ece0a0f3bf0b9294c1",
                "md5": "ede53892afd19d13cff8cf3d30954341",
                "sha256": "5d4e0f055a60ce35cde1d5c3211c24758d8bc9e2ecb407b027226546c6228ee5"
            },
            "downloads": -1,
            "filename": "smriprep_docker-0.15.0-py2.py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "ede53892afd19d13cff8cf3d30954341",
            "packagetype": "bdist_wheel",
            "python_version": "py2.py3",
            "requires_python": null,
            "size": 8517,
            "upload_time": "2024-03-23T00:29:26",
            "upload_time_iso_8601": "2024-03-23T00:29:26.654069Z",
            "url": "https://files.pythonhosted.org/packages/c1/58/c42bca2ccd3f4a59b96db29d8e545bdf10c1ef9ee2ece0a0f3bf0b9294c1/smriprep_docker-0.15.0-py2.py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "e5bdb4284d78cc5967391243561e9170bc66816563153882926fbe9b02b1d97c",
                "md5": "1124b826e15732d43cc91accf1d38732",
                "sha256": "2f631b8d42c1f9dc095354aa63a13a9a9b4e6bfeb724c7f4266593cf0d8ae9ba"
            },
            "downloads": -1,
            "filename": "smriprep-docker-0.15.0.tar.gz",
            "has_sig": false,
            "md5_digest": "1124b826e15732d43cc91accf1d38732",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 8499,
            "upload_time": "2024-03-23T00:29:31",
            "upload_time_iso_8601": "2024-03-23T00:29:31.722770Z",
            "url": "https://files.pythonhosted.org/packages/e5/bd/b4284d78cc5967391243561e9170bc66816563153882926fbe9b02b1d97c/smriprep-docker-0.15.0.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-03-23 00:29:31",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "nipreps",
    "github_project": "smriprep",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "circle": true,
    "requirements": [
        {
            "name": "astor",
            "specs": [
                [
                    "==",
                    "0.8.1"
                ]
            ]
        },
        {
            "name": "attrs",
            "specs": [
                [
                    "==",
                    "23.2.0"
                ]
            ]
        },
        {
            "name": "bids-validator",
            "specs": [
                [
                    "==",
                    "1.14.1"
                ]
            ]
        },
        {
            "name": "certifi",
            "specs": [
                [
                    "==",
                    "2024.2.2"
                ]
            ]
        },
        {
            "name": "charset-normalizer",
            "specs": [
                [
                    "==",
                    "3.3.2"
                ]
            ]
        },
        {
            "name": "ci-info",
            "specs": [
                [
                    "==",
                    "0.3.0"
                ]
            ]
        },
        {
            "name": "click",
            "specs": [
                [
                    "==",
                    "8.1.7"
                ]
            ]
        },
        {
            "name": "contourpy",
            "specs": [
                [
                    "==",
                    "1.2.0"
                ]
            ]
        },
        {
            "name": "cycler",
            "specs": [
                [
                    "==",
                    "0.12.1"
                ]
            ]
        },
        {
            "name": "docopt",
            "specs": [
                [
                    "==",
                    "0.6.2"
                ]
            ]
        },
        {
            "name": "etelemetry",
            "specs": [
                [
                    "==",
                    "0.3.1"
                ]
            ]
        },
        {
            "name": "filelock",
            "specs": [
                [
                    "==",
                    "3.13.1"
                ]
            ]
        },
        {
            "name": "fonttools",
            "specs": [
                [
                    "==",
                    "4.49.0"
                ]
            ]
        },
        {
            "name": "formulaic",
            "specs": [
                [
                    "==",
                    "0.5.2"
                ]
            ]
        },
        {
            "name": "greenlet",
            "specs": [
                [
                    "==",
                    "3.0.3"
                ]
            ]
        },
        {
            "name": "h5py",
            "specs": [
                [
                    "==",
                    "3.10.0"
                ]
            ]
        },
        {
            "name": "idna",
            "specs": [
                [
                    "==",
                    "3.6"
                ]
            ]
        },
        {
            "name": "imageio",
            "specs": [
                [
                    "==",
                    "2.34.0"
                ]
            ]
        },
        {
            "name": "indexed-gzip",
            "specs": [
                [
                    "==",
                    "1.8.7"
                ]
            ]
        },
        {
            "name": "interface-meta",
            "specs": [
                [
                    "==",
                    "1.3.0"
                ]
            ]
        },
        {
            "name": "isodate",
            "specs": [
                [
                    "==",
                    "0.6.1"
                ]
            ]
        },
        {
            "name": "jinja2",
            "specs": [
                [
                    "==",
                    "3.1.3"
                ]
            ]
        },
        {
            "name": "joblib",
            "specs": [
                [
                    "==",
                    "1.3.2"
                ]
            ]
        },
        {
            "name": "kiwisolver",
            "specs": [
                [
                    "==",
                    "1.4.5"
                ]
            ]
        },
        {
            "name": "lazy-loader",
            "specs": [
                [
                    "==",
                    "0.3"
                ]
            ]
        },
        {
            "name": "lockfile",
            "specs": [
                [
                    "==",
                    "0.12.2"
                ]
            ]
        },
        {
            "name": "looseversion",
            "specs": [
                [
                    "==",
                    "1.3.0"
                ]
            ]
        },
        {
            "name": "lxml",
            "specs": [
                [
                    "==",
                    "5.1.0"
                ]
            ]
        },
        {
            "name": "markupsafe",
            "specs": [
                [
                    "==",
                    "2.1.5"
                ]
            ]
        },
        {
            "name": "matplotlib",
            "specs": [
                [
                    "==",
                    "3.8.3"
                ]
            ]
        },
        {
            "name": "networkx",
            "specs": [
                [
                    "==",
                    "3.2.1"
                ]
            ]
        },
        {
            "name": "nibabel",
            "specs": [
                [
                    "==",
                    "5.2.1"
                ]
            ]
        },
        {
            "name": "nilearn",
            "specs": [
                [
                    "==",
                    "0.10.3"
                ]
            ]
        },
        {
            "name": "nipype",
            "specs": [
                [
                    "==",
                    "1.8.6"
                ]
            ]
        },
        {
            "name": "nitransforms",
            "specs": [
                [
                    "==",
                    "23.0.1"
                ]
            ]
        },
        {
            "name": "niworkflows",
            "specs": [
                [
                    "==",
                    "1.10.1"
                ]
            ]
        },
        {
            "name": "num2words",
            "specs": [
                [
                    "==",
                    "0.5.13"
                ]
            ]
        },
        {
            "name": "numpy",
            "specs": [
                [
                    "==",
                    "1.26.4"
                ]
            ]
        },
        {
            "name": "packaging",
            "specs": [
                [
                    "==",
                    "23.2"
                ]
            ]
        },
        {
            "name": "pandas",
            "specs": [
                [
                    "==",
                    "2.2.1"
                ]
            ]
        },
        {
            "name": "pillow",
            "specs": [
                [
                    "==",
                    "10.2.0"
                ]
            ]
        },
        {
            "name": "prov",
            "specs": [
                [
                    "==",
                    "2.0.0"
                ]
            ]
        },
        {
            "name": "pybids",
            "specs": [
                [
                    "==",
                    "0.16.4"
                ]
            ]
        },
        {
            "name": "pydot",
            "specs": [
                [
                    "==",
                    "2.0.0"
                ]
            ]
        },
        {
            "name": "pyparsing",
            "specs": [
                [
                    "==",
                    "3.1.2"
                ]
            ]
        },
        {
            "name": "python-dateutil",
            "specs": [
                [
                    "==",
                    "2.9.0.post0"
                ]
            ]
        },
        {
            "name": "pytz",
            "specs": [
                [
                    "==",
                    "2024.1"
                ]
            ]
        },
        {
            "name": "pyyaml",
            "specs": [
                [
                    "==",
                    "6.0.1"
                ]
            ]
        },
        {
            "name": "rdflib",
            "specs": [
                [
                    "==",
                    "7.0.0"
                ]
            ]
        },
        {
            "name": "requests",
            "specs": [
                [
                    "==",
                    "2.31.0"
                ]
            ]
        },
        {
            "name": "scikit-image",
            "specs": [
                [
                    "==",
                    "0.22.0"
                ]
            ]
        },
        {
            "name": "scikit-learn",
            "specs": [
                [
                    "==",
                    "1.4.1.post1"
                ]
            ]
        },
        {
            "name": "scipy",
            "specs": [
                [
                    "==",
                    "1.11.4"
                ]
            ]
        },
        {
            "name": "seaborn",
            "specs": [
                [
                    "==",
                    "0.13.2"
                ]
            ]
        },
        {
            "name": "simplejson",
            "specs": [
                [
                    "==",
                    "3.19.2"
                ]
            ]
        },
        {
            "name": "six",
            "specs": [
                [
                    "==",
                    "1.16.0"
                ]
            ]
        },
        {
            "name": "sqlalchemy",
            "specs": [
                [
                    "==",
                    "2.0.28"
                ]
            ]
        },
        {
            "name": "svgutils",
            "specs": [
                [
                    "==",
                    "0.3.4"
                ]
            ]
        },
        {
            "name": "templateflow",
            "specs": [
                [
                    "==",
                    "24.2.0"
                ]
            ]
        },
        {
            "name": "threadpoolctl",
            "specs": [
                [
                    "==",
                    "3.3.0"
                ]
            ]
        },
        {
            "name": "tifffile",
            "specs": [
                [
                    "==",
                    "2024.2.12"
                ]
            ]
        },
        {
            "name": "tqdm",
            "specs": [
                [
                    "==",
                    "4.66.2"
                ]
            ]
        },
        {
            "name": "traits",
            "specs": [
                [
                    "==",
                    "6.3.2"
                ]
            ]
        },
        {
            "name": "transforms3d",
            "specs": [
                [
                    "==",
                    "0.4.1"
                ]
            ]
        },
        {
            "name": "typing-extensions",
            "specs": [
                [
                    "==",
                    "4.10.0"
                ]
            ]
        },
        {
            "name": "tzdata",
            "specs": [
                [
                    "==",
                    "2024.1"
                ]
            ]
        },
        {
            "name": "urllib3",
            "specs": [
                [
                    "==",
                    "2.2.1"
                ]
            ]
        },
        {
            "name": "wrapt",
            "specs": [
                [
                    "==",
                    "1.16.0"
                ]
            ]
        }
    ],
    "lcname": "smriprep-docker"
}
        
Elapsed time: 0.21496s