## Citation
If you use Staphscope Typing Tool in your research, please cite it as:
Brown, B. (2025). Staphscope Typing Tool: Unified MLST + spa + SCCmec typing for Staphylococcus aureus. GitHub repository. https://github.com/bbeckley-hub/staphscope-typing-tool
# Staphscope Typing Tool
A unified MLST + spa + SCCmec typing tool for *Staphylococcus aureus*.
## Features
- Multi-locus sequence typing (MLST)
- spa typing
- SCCmec typing using CGE SCCmecFinder
- Parallel processing for high-throughput analysis
- Comprehensive reporting in multiple formats
## Installation
### Using Conda (Recommended)
```bash
conda create -n staphscope -c bioconda -c conda-forge blast python=3.8
conda activate staphscope
pip install staphscope
sudo apt-get staphscope
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