xmipp-metadata


Namexmipp-metadata JSON
Version 1.1.4 PyPI version JSON
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home_pagehttps://github.com/DavidHerreros/xmipp_metadata
SummaryPackage to handle Xmipp Metadata and image binary data
upload_time2024-11-22 10:00:08
maintainerNone
docs_urlNone
authorDavid Herreros
requires_pythonNone
licenseNone
keywords xmipp scipion cryoem imageprocessing scipion-3.0
VCS
bugtrack_url
requirements numpy pillow pillow pandas starfile mrcfile emfile emtable scikit-image morphsnakes joblib pytest
Travis-CI No Travis.
coveralls test coverage No coveralls.
            <h1 align='center'>Xmipp Metadata Handler</h1>

<p align="center">
        
<img alt="Supported Python versions" src="https://img.shields.io/badge/Supported_Python_Versions-3.8_%7C_3.9_%7C_3.10_%7C_3.11_%7C_3.12-blue">
<img alt="GitHub Downloads (all assets, all releases)" src="https://img.shields.io/github/downloads/DavidHerreros/xmipp_metadata/total">
<img alt="GitHub branch check runs" src="https://img.shields.io/github/check-runs/DavidHerreros/xmipp_metadata/master">
<img alt="GitHub License" src="https://img.shields.io/github/license/DavidHerreros/xmipp_metadata">

</p>

<p align="center">
        
<img alt="Xmipp" width="300" src="https://github.com/I2PC/scipion-em-xmipp/raw/devel/xmipp3/xmipp_logo.png">

</p>

This package implements a Xmipp Metadata handling functionality with image binary accession in Python.

# Included functionalities

- **XmippMetadata** class: Reading and writing of Xmipp Metadata files (.xmd)
- **ImageHandler** class: Reading and writing of image binaries stored in the metadata. It support the following formats:
    - MRC files (reading and writing) for stacks and volumes (.mrcs and .mrc)
    - Spider files (reading and writing) for stacks and volumes (.stk and .vol)
    - EM files (reading and writing) for stack and images (.ems and .em)

            

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    "description": "<h1 align='center'>Xmipp Metadata Handler</h1>\n\n<p align=\"center\">\n        \n<img alt=\"Supported Python versions\" src=\"https://img.shields.io/badge/Supported_Python_Versions-3.8_%7C_3.9_%7C_3.10_%7C_3.11_%7C_3.12-blue\">\n<img alt=\"GitHub Downloads (all assets, all releases)\" src=\"https://img.shields.io/github/downloads/DavidHerreros/xmipp_metadata/total\">\n<img alt=\"GitHub branch check runs\" src=\"https://img.shields.io/github/check-runs/DavidHerreros/xmipp_metadata/master\">\n<img alt=\"GitHub License\" src=\"https://img.shields.io/github/license/DavidHerreros/xmipp_metadata\">\n\n</p>\n\n<p align=\"center\">\n        \n<img alt=\"Xmipp\" width=\"300\" src=\"https://github.com/I2PC/scipion-em-xmipp/raw/devel/xmipp3/xmipp_logo.png\">\n\n</p>\n\nThis package implements a Xmipp Metadata handling functionality with image binary accession in Python.\n\n# Included functionalities\n\n- **XmippMetadata** class: Reading and writing of Xmipp Metadata files (.xmd)\n- **ImageHandler** class: Reading and writing of image binaries stored in the metadata. It support the following formats:\n    - MRC files (reading and writing) for stacks and volumes (.mrcs and .mrc)\n    - Spider files (reading and writing) for stacks and volumes (.stk and .vol)\n    - EM files (reading and writing) for stack and images (.ems and .em)\n",
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