| Name | Version | Summary | date |
| cogent3 |
2025.7.10a8 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-08-18 05:53:25 |
| checkamg |
0.4.1 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-08-18 02:35:04 |
| mdeq |
2025.6.30 |
mdeq: mutation disequilibrium analysis tools. |
2025-08-13 07:11:57 |
| hiscanner |
1.6 |
High-resolution single-cell copy number analysis. |
2025-08-12 13:18:41 |
| ensembl-tui |
0.4.3 |
Ensembl terminal user interface tools |
2025-08-12 05:30:48 |
| dsrnascan |
0.3.3 |
A tool for genome-wide prediction of double-stranded RNA structures |
2025-08-11 09:35:42 |
| pyrion |
0.1.11 |
A fast and efficient bioinformatics library for genomic data processing |
2025-08-09 23:07:39 |
| genesummary |
0.3.2 |
A comprehensive Python package for retrieving detailed gene information from multiple public databases |
2025-08-08 18:17:51 |
| snippy-nextgen |
1.3.0 |
The Next Generation of Microbial Variant Calling with Snippy |
2025-08-06 08:22:41 |
| phic |
2.1.2 |
Polymer dynamics simulation from Hi-C data |
2025-08-05 05:04:20 |
| ee-metadata |
0.2.2 |
A high-performance CLI tool from eDNA-Explorer to generate metadata from a directory of fastq files. |
2025-08-05 00:27:02 |
| alphagenome-pytorch |
0.1.1 |
AlphaGenome |
2025-08-04 18:35:50 |
| chewBBACA |
3.4.1 |
A complete suite for gene-by-gene schema creation and strain identification. |
2025-07-31 12:53:24 |
| genomic-benchmarks |
1.0.0 |
Genomic Benchmarks |
2025-07-30 12:24:26 |
| phylim |
2025.7.30 |
A library for checking the limits of phylogenetic tree estimation. |
2025-07-30 06:46:48 |
| intronator |
0.2.1 |
A Python package for comprehensive splice site analysis and simulation |
2025-07-29 14:51:21 |
| snipit-mc |
0.0.4 |
Enhanced snipit with artistic color palettes and improved SNP visualization |
2025-07-29 12:09:55 |
| ga4gh.va-spec |
0.4.2 |
GA4GH Variant Annotation (VA) reference implementation |
2025-07-29 11:38:54 |
| genebank-file-generater |
0.1.2 |
A comprehensive tool for converting DNA FASTA files to annotated GenBank format with automated gene prediction using Augustus |
2025-07-29 03:54:07 |
| vcf2fasta |
0.1.2 |
A package to convert VCF files to FASTA format. |
2025-07-29 02:35:16 |