| Name | Version | Summary | date |
| meteor |
2.0.17 |
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems |
2024-11-21 12:36:04 |
| metacoag |
1.2.2 |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs |
2024-09-26 06:08:40 |
| graphbin2 |
1.3.3 |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs |
2024-09-26 04:49:32 |
| gbintk |
1.0.0 |
gbintk (GraphBin-Tk): Assembly graph-based metagenomic binning toolkit |
2024-09-26 02:13:37 |
| recentrifuge |
1.15.0 |
Robust comparative analysis and contamination removal for metagenomics |
2024-09-25 02:38:03 |
| singlem |
0.18.3 |
Novelty-inclusive microbial community profiling of shotgun metagenomes |
2024-08-13 22:29:30 |
| ymp |
0.3.1 |
Flexible multi-omic pipeline system |
2024-07-19 20:47:08 |
| crocodeel |
1.0.5 |
CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data |
2024-06-05 15:16:49 |
| rnavirhost |
1.0.5 |
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes |
2024-05-25 16:36:45 |
| MicroView |
0.11.0 |
Generate reports from metagenomics data |
2024-05-02 18:41:26 |
| prophyle |
0.3.3.2 |
ProPhyle metagenomic classifier |
2024-04-21 15:31:41 |
| midas2 |
1.1.3 |
https://midas2.readthedocs.io/en/latest/ |
2023-12-06 08:17:49 |
| MetaCHIP2 |
2.3.8 |
HGT detection pipeline |
2023-11-24 03:28:09 |
| combined-gene-caller |
1.0.4 |
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal |
2023-08-14 13:58:29 |
| MetaCHIP |
1.10.13 |
HGT detection pipeline |
2023-05-17 23:54:47 |
| magpurify2 |
1.0.2 |
Identify and remove contaminants from metagenome-assembled genomes. |
2023-05-16 02:58:08 |
| motu-profiler |
3.1.0 |
Taxonomic profiling of metagenomes from diverse environments with mOTUs3 |
2023-04-13 15:53:57 |
| MarkerMAG |
1.1.28 |
linking MAGs with 16S rRNA marker genes |
2023-04-13 02:17:02 |
| micomplete |
1.1.1 |
Quality control of assembled genomes |
2019-07-25 16:05:10 |