Name | Version | Summary | date |
metacoag |
1.2.1 |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs |
2024-06-07 00:26:52 |
crocodeel |
1.0.5 |
CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data |
2024-06-05 15:16:49 |
rnavirhost |
1.0.5 |
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes |
2024-05-25 16:36:45 |
singlem |
0.17.0 |
Novelty-inclusive microbial community profiling of shotgun metagenomes |
2024-05-11 22:26:44 |
meteor |
2.0.11 |
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems |
2024-05-09 10:28:16 |
MicroView |
0.11.0 |
Generate reports from metagenomics data |
2024-05-02 18:41:26 |
graphbin2 |
1.2.3 |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs |
2024-04-22 07:00:48 |
prophyle |
0.3.3.2 |
ProPhyle metagenomic classifier |
2024-04-21 15:31:41 |
cocopye |
0.4.0 |
Feature-based prediction of genome quality indices |
2024-02-15 14:30:41 |
recentrifuge |
1.14.0 |
Robust comparative analysis and contamination removal for metagenomics |
2024-02-06 07:35:12 |
Binette |
1.0.0 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2024-01-29 22:20:14 |
midas2 |
1.1.3 |
https://midas2.readthedocs.io/en/latest/ |
2023-12-06 08:17:49 |
MetaCHIP2 |
2.3.8 |
HGT detection pipeline |
2023-11-24 03:28:09 |
fetch-tool |
0.9.0 |
Utility to fetch public and private RAW read and assembly files from the ENA |
2023-09-01 12:34:05 |
combined-gene-caller |
1.0.4 |
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal |
2023-08-14 13:58:29 |
MetaCHIP |
1.10.13 |
HGT detection pipeline |
2023-05-17 23:54:47 |
MetaSBT |
0.1.2 |
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees |
2023-05-16 19:03:02 |
magpurify2 |
1.0.2 |
Identify and remove contaminants from metagenome-assembled genomes. |
2023-05-16 02:58:08 |
motu-profiler |
3.1.0 |
Taxonomic profiling of metagenomes from diverse environments with mOTUs3 |
2023-04-13 15:53:57 |
MarkerMAG |
1.1.28 |
linking MAGs with 16S rRNA marker genes |
2023-04-13 02:17:02 |