# A Beta project LevSeq vis
Web app for combining and visualising [LevSeq](https://github.com/fhalab/LevSeq) sequence function data.
Test it out with the [data](data/) in the data folder. Use the columns in the screenshot below.
Once you have your figures you can download the csv results by hovering on any of the tables.
## Upload with data
Using the `visualization_partial.csv` file as the variant file and the `300-1` in the `ep1` folder.
### Tables for download
We join the data based on user selected columns (in this case `cis` and `trans`) from a LC-MS run.
### Overview of alignment count
The alignment count is how many reads assigned to each type were assigned to each well.
### Scatterplot of multiple features
This shows the fitness values of two plotted against eachother, if only one feature is provided we will plot it against
the alignment count.
## Please provide feedback
Leave a feature request in the issues or on [LevSeq](https://github.com/fhalab/LevSeq) .
## Cite
Cite our [paper](https://doi.org/10.1101/2024.09.04.611255) please if you use it.
## Developers
```
streamlit run app.py
```
## References
Streamlit app based on: https://share.streamlit.io/streamlit/example-app-csv-wrangler/
Thanks to you who made it <3
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