| Name | Version | Summary | date |
| chewBBACA |
3.4.1 |
A complete suite for gene-by-gene schema creation and strain identification. |
2025-07-31 12:53:24 |
| snippy-nextgen |
1.1.0 |
The Next Generation of Microbial Variant Calling with Snippy |
2025-07-31 07:28:43 |
| checkamg |
0.3.3 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-31 02:40:53 |
| genomic-benchmarks |
1.0.0 |
Genomic Benchmarks |
2025-07-30 12:24:26 |
| phylim |
2025.7.30 |
A library for checking the limits of phylogenetic tree estimation. |
2025-07-30 06:46:48 |
| intronator |
0.2.1 |
A Python package for comprehensive splice site analysis and simulation |
2025-07-29 14:51:21 |
| snipit-mc |
0.0.4 |
Enhanced snipit with artistic color palettes and improved SNP visualization |
2025-07-29 12:09:55 |
| ga4gh.va-spec |
0.4.2 |
GA4GH Variant Annotation (VA) reference implementation |
2025-07-29 11:38:54 |
| genebank-file-generater |
0.1.2 |
A comprehensive tool for converting DNA FASTA files to annotated GenBank format with automated gene prediction using Augustus |
2025-07-29 03:54:07 |
| vcf2fasta |
0.1.2 |
A package to convert VCF files to FASTA format. |
2025-07-29 02:35:16 |
| ensembl-tui |
0.4.1 |
Ensembl terminal user interface tools |
2025-07-29 02:24:07 |
| odm-sdk |
1.61.0 |
SDK for interacting with the Open Data Manager |
2025-07-28 14:20:49 |
| gene-fetch |
1.0.14 |
Gene Fetch: High-throughput NCBI Sequence Retrieval Tool |
2025-07-28 12:34:51 |
| pyranges1 |
1.1.3 |
GenomicRanges for Python. |
2025-07-28 07:16:56 |
| cogent3 |
2025.7.10a5 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-28 03:44:22 |
| mite-extras |
1.5.1 |
Parsing, conversion, and validation functionality for Minimum Information about a Tailoring Enzyme (MITE) files. |
2025-07-26 07:49:42 |
| genepattern-notebook |
25.7 |
GenePattern Notebook extension for JupyterLab |
2025-07-25 16:26:49 |
| alphagenome-pytorch |
0.1.0 |
AlphaGenome |
2025-07-24 03:38:42 |
| cooler |
0.10.4 |
Sparse binary format for genomic interaction matrices. |
2025-07-21 23:54:45 |
| akita-torch |
0.1.0 |
Pytorch implementation of Akita model for Hi-C prediction from DNA sequence |
2025-07-18 04:37:00 |