| Name | Version | Summary | date |
| cpg-utils |
5.4.1 |
Library of convenience functions specific to the CPG |
2025-07-17 07:18:03 |
| bactopia |
1.6.0 |
A Python package for working with Bactopia |
2025-07-16 19:37:35 |
| genome-uploader |
2.3.4 |
Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). This script generates xmls and manifests necessary for submission with webin-cli. |
2025-07-16 16:13:37 |
| pyCirclizely |
1.0.1 |
Circular visualization in Python, plotly implemented |
2025-07-16 13:42:56 |
| hbat |
2.2.6 |
Hydrogen Bond Analysis Tool for PDB structures |
2025-07-16 03:26:57 |
| vecmap |
1.0.0 |
Ultrafast exact sequence matching in pure Python using NumPy vectorization |
2025-07-16 02:42:36 |
| viralquest |
2.6.20 |
A bioinformatics tool for viral genome analysis and characterization. |
2025-07-15 21:43:20 |
| amplicon-coverage-inspector |
1.15.250702 |
Visualization of coverage for amplicon sequencing |
2025-07-15 19:27:06 |
| kmerdb |
0.9.4 |
Yet another k-mer counter for Genomics, Metagenomics, and Phylogenomics applications... |
2025-07-15 03:14:53 |
| pyranges1 |
1.1.1 |
GenomicRanges for Python. |
2025-07-12 20:47:20 |
| cancer-clinical-data-analysis |
0.1.1 |
A comprehensive Python package for cancer clinical data analysis including data processing, statistical analysis, survival modeling, and visualization |
2025-07-12 20:18:21 |
| cell-decipher |
0.2.0 |
Spatial-omics data embedding and analysis |
2025-07-11 08:29:22 |
| ols-mcp |
0.1.5 |
MCP for retrieving things from the Ontology Lookup Service |
2025-07-10 14:50:48 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| checkamg |
0.3.2 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-07-09 20:32:26 |
| genomehubs |
2.10.20 |
GenomeHubs |
2025-07-09 12:33:32 |
| omicverse |
1.7.5 |
OmicVerse: A single pipeline for exploring the entire transcriptome universe |
2025-07-09 10:43:52 |
| multiqc |
1.30 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-07-09 10:24:38 |
| nextflowpy |
0.12.0 |
A Python wrapper around Nextflow. |
2025-07-08 19:17:24 |
| gene-fetch |
1.0.13 |
Gene Fetch: High-throughput NCBI Sequence Retrieval Tool |
2025-07-08 09:50:55 |